Variant report

Variant	rs7739912
Chromosome Location	chr6:128340790-128340791
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128332791..128334528-chr6:128339437..128341459,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs3190930	1.00[JPT][hapmap]
rs3933376	1.00[JPT][hapmap]
rs4341027	1.00[JPT][hapmap]
rs4559105	1.00[JPT][hapmap]
rs4598101	1.00[CHB][hapmap]
rs62426538	1.00[EUR][1000 genomes]
rs6938574	1.00[CHB][hapmap]
rs7774703	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604642	chr6:128278798-128351143	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128289000-128431000	Weak transcription	Psoas Muscle	Psoas
2	chr6:128293600-128374400	Weak transcription	Pancreas	Pancrea
3	chr6:128298000-128352600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:128302800-128343800	Weak transcription	Ovary	ovary
5	chr6:128305200-128353000	Weak transcription	Left Ventricle	heart
6	chr6:128306000-128343200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:128307200-128340800	Weak transcription	HSMMtube	muscle
8	chr6:128307800-128370800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:128311600-128387200	Weak transcription	NH-A	brain
10	chr6:128311800-128378400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:128314000-128367400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:128320800-128350200	Weak transcription	Fetal Thymus	thymus
13	chr6:128320800-128357800	Weak transcription	Fetal Intestine Small	intestine
14	chr6:128320800-128388200	Weak transcription	NHEK	skin
15	chr6:128326400-128342800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:128326400-128351000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:128326600-128343400	Weak transcription	Fetal Intestine Large	intestine
18	chr6:128326600-128356600	Weak transcription	HSMM	muscle
19	chr6:128326600-128388200	Weak transcription	HMEC	breast
20	chr6:128327000-128340800	Weak transcription	Primary B cells from cord blood	blood
21	chr6:128329200-128353000	Weak transcription	HepG2	liver
22	chr6:128330200-128353000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:128330400-128341000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:128337000-128346200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr6:128337400-128378400	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr6:128338800-128345000	Weak transcription	Stomach Mucosa	stomach
27	chr6:128339400-128343200	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr6:128340200-128341000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:128340400-128341200	Enhancers	Fetal Heart	heart
30	chr6:128340600-128341000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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