Variant report

Variant	rs774014
Chromosome Location	chr3:138168521-138168522
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1109088	0.93[ASN][1000 genomes]
rs12054428	0.87[EUR][1000 genomes]
rs12630351	0.83[EUR][1000 genomes]
rs12631438	0.95[ASN][1000 genomes]
rs12633098	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12638938	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13098554	0.83[EUR][1000 genomes]
rs1546758	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1679153	0.90[ASN][1000 genomes]
rs1679170	0.99[ASN][1000 genomes]
rs1679176	0.85[ASN][1000 genomes]
rs1679177	0.85[ASN][1000 genomes]
rs1679179	0.96[ASN][1000 genomes]
rs1679181	0.96[ASN][1000 genomes]
rs1720826	0.85[ASN][1000 genomes]
rs1720829	0.96[ASN][1000 genomes]
rs1720830	0.85[ASN][1000 genomes]
rs1720832	0.85[ASN][1000 genomes]
rs34963112	0.85[ASN][1000 genomes]
rs35270255	0.83[EUR][1000 genomes]
rs6768963	0.87[EUR][1000 genomes]
rs7609893	0.93[ASN][1000 genomes]
rs7611650	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs811794	0.96[EUR][1000 genomes]
rs812277	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs940234	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877537	chr3:137979007-138215114	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv530057	chr3:138014877-138734390	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	esv3447663	chr3:138096329-138273034	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv460864	chr3:138100539-138194435	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv591853	chr3:138100539-138194435	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv999041	chr3:138148812-138347988	Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138155000-138182800	Weak transcription	Gastric	stomach
2	chr3:138155200-138169200	Weak transcription	Brain Angular Gyrus	brain
3	chr3:138156000-138175800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:138156600-138170400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:138160400-138169400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:138160600-138170400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:138161600-138169600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:138161600-138170000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr3:138161600-138198400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr3:138162400-138170000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr3:138162400-138177200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:138162800-138178800	Weak transcription	Fetal Intestine Small	intestine
13	chr3:138163600-138173800	Weak transcription	Lung	lung
14	chr3:138164200-138169200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:138164600-138168600	Weak transcription	Fetal Muscle Leg	muscle
16	chr3:138164600-138169600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr3:138166600-138183200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr3:138167800-138171200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:138168400-138168600	Enhancers	Fetal Muscle Trunk	muscle

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