Variant report

Variant	rs7740425
Chromosome Location	chr6:143780655-143780656
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143769577..143772365-chr6:143778792..143780914,2	MCF-7	breast:
2	chr6:143771894..143773645-chr6:143774533..143780874,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000189007	Chromatin interaction
ENSG00000034693	Chromatin interaction
ENSG00000223203	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10484800	0.87[YRI][hapmap];0.83[AMR][1000 genomes]
rs17072603	0.87[YRI][hapmap];0.83[AMR][1000 genomes]
rs17072609	0.87[YRI][hapmap];0.83[AMR][1000 genomes]
rs17072618	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17072650	0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17072662	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17072714	0.90[ASW][hapmap]
rs6570560	0.83[AMR][1000 genomes]
rs6905956	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7746798	0.86[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143772600-143780800	Weak transcription	Esophagus	oesophagus
2	chr6:143772600-143790000	Weak transcription	Pancreas	Pancrea
3	chr6:143772600-143790000	Weak transcription	Spleen	Spleen
4	chr6:143772600-143791200	Weak transcription	Lung	lung
5	chr6:143772600-143811600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:143772600-143832000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:143772800-143780800	Weak transcription	Fetal Thymus	thymus
8	chr6:143772800-143784000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr6:143772800-143796600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:143772800-143798600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:143772800-143815000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:143772800-143821200	Weak transcription	Psoas Muscle	Psoas
13	chr6:143773000-143781800	Weak transcription	Fetal Stomach	stomach
14	chr6:143773000-143782000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:143773000-143782000	Weak transcription	Ovary	ovary
16	chr6:143773000-143784000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr6:143773000-143791400	Weak transcription	Thymus	Thymus
18	chr6:143773000-143793400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr6:143773000-143793600	Weak transcription	HSMMtube	muscle
20	chr6:143773000-143797400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr6:143773000-143801400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:143773000-143811600	Weak transcription	Right Ventricle	heart
23	chr6:143773000-143814600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr6:143773000-143814800	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr6:143773000-143815000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr6:143773000-143815000	Weak transcription	Colonic Mucosa	Colon
27	chr6:143773200-143793000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:143773200-143793000	Weak transcription	Brain Substantia Nigra	brain
29	chr6:143773200-143793600	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr6:143773200-143827000	Weak transcription	Brain Germinal Matrix	brain
31	chr6:143773400-143781600	Weak transcription	Fetal Intestine Small	intestine
32	chr6:143773400-143782000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:143773400-143782200	Weak transcription	Primary hematopoietic stem cells	blood
34	chr6:143773400-143784000	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr6:143773400-143791400	Weak transcription	Primary B cells from peripheral blood	blood
36	chr6:143773400-143791400	Weak transcription	Brain Angular Gyrus	brain
37	chr6:143773400-143792800	Weak transcription	Duodenum Mucosa	Duodenum
38	chr6:143773400-143796800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr6:143773400-143814200	Weak transcription	K562	blood
40	chr6:143773400-143814600	Weak transcription	HUVEC	blood vessel
41	chr6:143773400-143814800	Weak transcription	Hela-S3	cervix
42	chr6:143773400-143815000	Weak transcription	A549	lung
43	chr6:143773400-143818200	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr6:143773400-143832000	Weak transcription	Fetal Brain Male	brain
45	chr6:143773600-143782000	Weak transcription	Primary B cells from cord blood	blood
46	chr6:143773600-143785000	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr6:143773800-143782200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr6:143774000-143780800	Weak transcription	Fetal Lung	lung
49	chr6:143774400-143792800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr6:143774400-143819400	Weak transcription	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links