Variant report

Variant	rs7740505
Chromosome Location	chr6:150400488-150400489
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150399642..150402199-chr6:150464178..150465810,2	MCF-7	breast:
2	chr6:150400447..150403376-chr6:150651283..150654200,2	K562	blood:
3	chr6:150394796..150396864-chr6:150397633..150400539,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198729	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1953320	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4870250	0.84[ASN][1000 genomes]
rs789818	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv886767	chr6:150335407-150400488	Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1026236	chr6:150360882-150408946	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7740505	ULBP1	cis	cerebellum	SCAN
rs7740505	TH1L	trans	cerebellum	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150390800-150400800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:150391200-150410000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:150392400-150400600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:150393800-150400800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:150394000-150401800	Weak transcription	Stomach Mucosa	stomach
6	chr6:150397800-150400600	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr6:150397800-150400800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:150398000-150400600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:150398000-150400800	Weak transcription	Primary T cells from cord blood	blood
10	chr6:150398200-150400600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:150398200-150400800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr6:150398400-150400600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr6:150399800-150400800	Enhancers	NHEK	skin
14	chr6:150400000-150401000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:150400000-150401000	Enhancers	HMEC	breast
16	chr6:150400000-150402200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr6:150400200-150400800	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr6:150400200-150401000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:150400200-150401400	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr6:150400200-150401800	Enhancers	Primary T cells fromperipheralblood	blood

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