Variant report

Variant	rs7740931
Chromosome Location	chr6:93382356-93382357
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10944606	0.82[ASN][1000 genomes]
rs12193201	0.85[ASN][1000 genomes]
rs12523871	0.82[ASN][1000 genomes]
rs1418168	0.82[ASN][1000 genomes]
rs1459809	0.82[ASN][1000 genomes]
rs1599185	0.84[ASN][1000 genomes]
rs6935450	0.84[ASN][1000 genomes]
rs7739761	0.82[ASN][1000 genomes]
rs7757624	0.89[ASN][1000 genomes]
rs7758146	0.82[ASN][1000 genomes]
rs7762001	0.84[ASN][1000 genomes]
rs9342333	0.91[ASN][1000 genomes]
rs9342334	0.91[ASN][1000 genomes]
rs9345250	0.84[ASN][1000 genomes]
rs9353937	0.98[ASN][1000 genomes]
rs9359989	0.82[ASN][1000 genomes]
rs9359990	0.89[ASN][1000 genomes]
rs9359991	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886355	chr6:93166766-93530757	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1018402	chr6:93173579-93855804	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1031496	chr6:93365937-93715883	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv604148	chr6:93368951-93396467	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv886358	chr6:93378969-93424897	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:93378000-93383400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:93380200-93382600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:93381800-93383000	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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