Variant report

Variant	rs7741512
Chromosome Location	chr6:131951587-131951588
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7757411	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv886668	chr6:131814865-131954797	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131949800-131952400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:131949800-131952800	Weak transcription	Fetal Intestine Small	intestine
3	chr6:131949800-131983200	Weak transcription	Aorta	Aorta
4	chr6:131950000-131951800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:131950000-131951800	Enhancers	Brain Cingulate Gyrus	brain
6	chr6:131950200-131951600	Weak transcription	Brain Anterior Caudate	brain
7	chr6:131950200-131952000	Enhancers	K562	blood
8	chr6:131950200-131952400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:131950200-131952400	Weak transcription	Fetal Intestine Large	intestine
10	chr6:131950200-131962600	Weak transcription	Small Intestine	intestine
11	chr6:131950400-131952400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr6:131950400-131952600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr6:131950800-131952400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:131951400-131952000	Enhancers	Colon Smooth Muscle	Colon
15	chr6:131951400-131952600	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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