Variant report

Variant	rs77417865
Chromosome Location	chr6:30182808-30182809
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:30178310..30184484-chr6:30311860..30320436,13	MCF-7	breast:
2	chr6:30182391..30184727-chr6:30190494..30193163,2	MCF-7	breast:
3	chr6:30182145..30184666-chr6:30223310..30225294,2	MCF-7	breast:
4	chr6:30182772..30184809-chr6:30214077..30216863,2	K562	blood:
5	chr6:30180733..30183619-chr6:30310467..30312981,3	MCF-7	breast:
6	chr6:30068684..30075353-chr6:30179679..30184952,7	MCF-7	breast:
7	chr6:30178635..30184988-chr6:30292357..30296104,9	MCF-7	breast:
8	chr6:30181485..30183400-chr6:30291563..30295527,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000241370	Chromatin interaction
ENSG00000204599	Chromatin interaction
ENSG00000231074	Chromatin interaction
ENSG00000204616	Chromatin interaction
ENSG00000270604	Chromatin interaction
ENSG00000231226	Chromatin interaction
ENSG00000224372	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884058	chr6:30182395-30202429	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30182600-30183000	Enhancers	Placenta	Placenta
2	chr6:30182600-30183200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:30182600-30183200	Enhancers	Liver	Liver
4	chr6:30182600-30183200	Enhancers	Fetal Brain Female	brain
5	chr6:30182600-30183200	Weak transcription	HSMMtube	muscle
6	chr6:30182600-30183400	Enhancers	Thymus	Thymus
7	chr6:30182600-30183600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr6:30182600-30183800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:30182600-30183800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:30182600-30183800	Weak transcription	NHLF	lung
11	chr6:30182600-30184400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:30182600-30184600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:30182600-30185600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:30182600-30186800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr6:30182600-30187000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr6:30182600-30187000	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr6:30182600-30187000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr6:30182600-30187000	Weak transcription	Brain Angular Gyrus	brain
19	chr6:30182600-30187000	Weak transcription	Fetal Thymus	thymus
20	chr6:30182600-30187200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr6:30182600-30187200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:30182600-30187200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr6:30182600-30187200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:30182600-30187200	Weak transcription	Adipose Nuclei	Adipose
25	chr6:30182600-30187200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr6:30182600-30187200	Weak transcription	Brain Hippocampus Middle	brain
27	chr6:30182600-30187200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr6:30182600-30187200	Weak transcription	Colon Smooth Muscle	Colon
29	chr6:30182600-30187200	Weak transcription	Stomach Mucosa	stomach
30	chr6:30182600-30189200	Weak transcription	Right Atrium	heart
31	chr6:30182800-30183200	Enhancers	Primary B cells from peripheral blood	blood
32	chr6:30182800-30183200	Enhancers	GM12878-XiMat	blood
33	chr6:30182800-30184200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:30182800-30184600	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr6:30182800-30186400	Weak transcription	HepG2	liver
36	chr6:30182800-30186800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr6:30182800-30186800	Weak transcription	Duodenum Mucosa	Duodenum
38	chr6:30182800-30186800	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr6:30182800-30187000	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr6:30182800-30187000	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr6:30182800-30187200	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr6:30182800-30187200	Weak transcription	Fetal Intestine Large	intestine
43	chr6:30182800-30187200	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links