Variant report

Variant	rs7742279
Chromosome Location	chr6:121838584-121838585
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11154033	0.87[AMR][1000 genomes]
rs12212833	0.90[AFR][1000 genomes]
rs1535824	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59599989	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6915013	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886594	chr6:121837314-122043117	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121828600-121841200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:121830600-121843200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:121832000-121841400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:121832000-121842000	Weak transcription	HMEC	breast
5	chr6:121832200-121840600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:121835200-121838800	Enhancers	HUVEC	blood vessel
7	chr6:121837200-121840600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:121837200-121840600	Weak transcription	A549	lung
9	chr6:121837400-121841000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:121837600-121842200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:121837600-121843000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:121838000-121841000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:121838000-121841000	Weak transcription	Osteobl	bone
14	chr6:121838200-121840600	Weak transcription	NH-A	brain
15	chr6:121838200-121844000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:121838400-121839000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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