Variant report

Variant	rs7742625
Chromosome Location	chr6:38719850-38719851
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1018420	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1033524	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs12196388	1.00[CHB][hapmap]
rs12208880	1.00[CHB][hapmap]
rs12209872	1.00[CHB][hapmap]
rs13196250	1.00[CHB][hapmap]
rs13208143	1.00[CHB][hapmap]
rs13213448	1.00[CHB][hapmap]
rs13219077	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1625177	1.00[CHB][hapmap]
rs1631117	1.00[CHD][hapmap]
rs17620389	1.00[CHD][hapmap]
rs1781723	1.00[CHB][hapmap]
rs1937777	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs506672	1.00[CHB][hapmap]
rs6923304	1.00[CHB][hapmap]
rs6928323	1.00[CHB][hapmap]
rs6930268	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs9296260	1.00[CHB][hapmap];1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv830642	chr6:38645056-38800657	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3504257	chr6:38719772-38720202	Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3504258	chr6:38719784-38720235	Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3504259	chr6:38719804-38720166	Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7742625	UHRF1BP1	cis	cerebellum	SCAN
rs7742625	MOCS1	cis	cerebellum	SCAN
rs7742625	LHFPL5	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38706200-38738600	Weak transcription	K562	blood
2	chr6:38719400-38722400	Weak transcription	HMEC	breast
3	chr6:38719400-38722600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:38719800-38722800	Weak transcription	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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