Variant report

Variant	rs7742690
Chromosome Location	chr6:166698942-166698943
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs73043903	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73043970	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73043971	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7746728	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7760999	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9348113	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9364842	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9364843	0.81[ASN][1000 genomes]
rs9459634	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9459635	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886934	chr6:166642850-166747572	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3390013	chr6:166697249-166701057	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3400907	chr6:166698836-166699266	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166687600-166704800	Weak transcription	Right Atrium	heart
2	chr6:166691200-166706000	Weak transcription	Brain Anterior Caudate	brain
3	chr6:166697400-166699200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:166698000-166699000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:166698200-166699000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr6:166698400-166699000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:166698400-166705800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:166698800-166699000	Bivalent Enhancer	K562	blood
9	chr6:166698800-166699600	Enhancers	GM12878-XiMat	blood
10	chr6:166698800-166700200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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