Variant report

Variant	rs7743464
Chromosome Location	chr6:3961288-3961289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2326366	0.82[CEU][hapmap];0.84[CHB][hapmap];0.86[CHD][hapmap];0.81[GIH][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs4377826	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7775663	0.83[ASN][1000 genomes]
rs9328208	0.81[ASN][1000 genomes]
rs9378391	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9378392	0.87[ASN][1000 genomes]
rs9378834	0.80[ASN][1000 genomes]
rs9392538	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9405214	0.81[CHD][hapmap];0.81[JPT][hapmap]
rs9405686	0.93[ASN][1000 genomes]
rs9502103	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532020	chr6:3417520-4140257	Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1022968	chr6:3862744-4272502	Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv538106	chr6:3862744-4272502	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7743464	SERPINB9	cis	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:3959800-3963200	Weak transcription	Fetal Brain Male	brain
2	chr6:3960200-3961400	Enhancers	Placenta Amnion	Placenta Amnion
3	chr6:3960600-3961600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:3960800-3961400	Enhancers	Pancreas	Pancrea
5	chr6:3960800-3962000	Enhancers	HSMM	muscle
6	chr6:3960800-3964000	Enhancers	NH-A	brain
7	chr6:3961000-3962000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:3961000-3962000	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr6:3961000-3962400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:3961200-3961600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:3961200-3962000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:3961200-3962000	Enhancers	HSMMtube	muscle
13	chr6:3961200-3962400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr6:3961200-3963400	Enhancers	NHDF-Ad	bronchial
15	chr6:3961200-3963400	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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