Variant report

Variant	rs7743750
Chromosome Location	chr6:25317503-25317504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:25304384..25306204-chr6:25317255..25319611,2	MCF-7	breast:
2	chr6:25315748..25318380-chr6:25321578..25323806,2	K562	blood:
3	chr6:25316945..25319715-chr6:25323364..25325803,2	MCF-7	breast:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs12055697	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16890366	0.99[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1883393	0.94[ASN][1000 genomes]
rs2143023	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2690042	0.93[ASN][1000 genomes]
rs2744287	0.93[ASN][1000 genomes]
rs4712904	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712905	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4712906	0.98[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4712907	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs55967593	0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs55999195	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs58191968	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs60084615	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6456664	0.98[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6456665	0.98[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6456666	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6456668	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6903148	0.98[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6906812	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6913606	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6913886	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6914439	0.98[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6914514	0.98[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6914654	0.98[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6914798	0.98[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6914930	0.98[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6915270	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6917631	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6921343	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6923529	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6927238	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6938281	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs730711	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392399	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73396126	0.89[ASN][1000 genomes]
rs7741580	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7746942	0.95[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7746969	0.98[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7755701	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7756143	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7758529	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7759796	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7759828	0.80[ASN][1000 genomes]
rs7759879	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7760067	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7760151	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7764111	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9295654	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9295655	0.80[AFR][1000 genomes]
rs9348671	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9356974	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9366616	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9366617	0.83[AFR][1000 genomes]
rs9379752	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9379753	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9393639	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9461132	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9461134	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9461135	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9461136	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9467466	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs999039	0.98[AFR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883485	chr6:25259137-25437986	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv883486	chr6:25260434-25422369	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv883487	chr6:25280119-25508868	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25305000-25324400	Weak transcription	Left Ventricle	heart
2	chr6:25306600-25331400	Weak transcription	Spleen	Spleen
3	chr6:25310400-25319400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:25312000-25324200	Weak transcription	Esophagus	oesophagus
5	chr6:25312000-25324200	Weak transcription	Pancreas	Pancrea
6	chr6:25313400-25329800	Weak transcription	Primary T cells from cord blood	blood
7	chr6:25313600-25320200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:25313800-25318400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:25313800-25318400	Weak transcription	Lung	lung
10	chr6:25313800-25322800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:25313800-25325800	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr6:25313800-25326800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:25313800-25331400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:25314000-25318800	Weak transcription	Small Intestine	intestine
15	chr6:25314000-25325000	Weak transcription	Placenta	Placenta
16	chr6:25314200-25318400	Weak transcription	NHDF-Ad	bronchial
17	chr6:25314200-25319200	Weak transcription	Thymus	Thymus
18	chr6:25314800-25317600	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr6:25314800-25319000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr6:25315400-25329600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:25315800-25324200	Weak transcription	Hela-S3	cervix
22	chr6:25316000-25320200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr6:25316000-25320400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr6:25316200-25318400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:25316200-25318400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr6:25316200-25319000	Weak transcription	Fetal Brain Female	brain
27	chr6:25316200-25319000	Weak transcription	Fetal Intestine Small	intestine
28	chr6:25316200-25320400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr6:25316200-25326800	Weak transcription	Gastric	stomach
30	chr6:25316400-25318400	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr6:25316400-25318400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr6:25316400-25318400	Weak transcription	HSMMtube	muscle
33	chr6:25316400-25318800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr6:25316400-25326600	Weak transcription	Fetal Kidney	kidney
35	chr6:25316600-25317800	Weak transcription	Right Atrium	heart
36	chr6:25316600-25318200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr6:25316600-25318400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr6:25316600-25318400	Weak transcription	Ovary	ovary
39	chr6:25316600-25319000	Weak transcription	Duodenum Mucosa	Duodenum
40	chr6:25316600-25319600	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr6:25316600-25324200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:25317200-25319000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr6:25317200-25324200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:25317200-25324200	Weak transcription	Aorta	Aorta
45	chr6:25317400-25318400	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr6:25317400-25318400	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr6:25317400-25318400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr6:25317400-25319000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr6:25317400-25320200	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr6:25317400-25320400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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