Variant report

Variant	rs7744326
Chromosome Location	chr6:166997177-166997178
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166987161..166988700-chr6:166996130..166998368,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs7738206	1.00[MEX][hapmap]
rs7743191	1.00[MEX][hapmap];0.81[AMR][1000 genomes]
rs7757251	0.95[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7775422	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv5592	chr6:166958317-167002951	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1029530	chr6:166977678-167016052	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166979400-166997600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:166981800-167002400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:166986200-167002200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:166986600-167001400	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:166986800-166997800	Weak transcription	Brain Substantia Nigra	brain
6	chr6:166986800-167003000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:166987000-166997200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:166987000-167002000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:166987200-166997600	Weak transcription	NHLF	lung
10	chr6:166987200-166998400	Weak transcription	NH-A	brain
11	chr6:166987200-167001800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:166989000-167011400	Weak transcription	Ovary	ovary
13	chr6:166989600-167001800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr6:166990600-167001800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:166991600-166997800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:166991600-166998800	Enhancers	Fetal Brain Male	brain
17	chr6:166992000-166998800	Enhancers	Fetal Muscle Leg	muscle
18	chr6:166992400-167000200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:166992400-167000400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:166993600-167003000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr6:166993800-167001800	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr6:166994000-167003600	Weak transcription	Brain Germinal Matrix	brain
23	chr6:166994800-167002000	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr6:166995000-167008400	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr6:166995600-166997600	Weak transcription	Right Atrium	heart
26	chr6:166995600-166998000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:166995600-167000200	Weak transcription	Brain Angular Gyrus	brain
28	chr6:166995600-167002400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr6:166995800-166997200	Weak transcription	NHDF-Ad	bronchial
30	chr6:166995800-167000400	Weak transcription	Spleen	Spleen
31	chr6:166995800-167001200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:166995800-167001600	Weak transcription	Gastric	stomach
33	chr6:166995800-167002200	Weak transcription	Right Ventricle	heart
34	chr6:166996000-166997200	Weak transcription	HSMMtube	muscle
35	chr6:166996400-166997800	Enhancers	Fetal Muscle Trunk	muscle
36	chr6:166996400-166998400	Weak transcription	HSMM	muscle
37	chr6:166996600-166997200	Enhancers	H1 Cell Line	embryonic stem cell
38	chr6:166996600-166997200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr6:166996600-166997200	Enhancers	Esophagus	oesophagus
40	chr6:166996600-166998000	Enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr6:166996600-166998000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr6:166996600-166998600	Enhancers	Rectal Smooth Muscle	rectum
43	chr6:166996600-166998800	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr6:166996600-166998800	Genic enhancers	Muscle Satellite Cultured Cells	--
45	chr6:166996600-166999000	Enhancers	Primary neutrophils fromperipheralblood	blood
46	chr6:166996600-166999000	Enhancers	Osteobl	bone
47	chr6:166996800-166997200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr6:166996800-166997200	Strong transcription	Aorta	Aorta
49	chr6:166996800-166997400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr6:166996800-166997400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links