Variant report

Variant	rs7744607
Chromosome Location	chr6:120183533-120183534
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs6914733	1.00[EUR][1000 genomes]
rs73527518	1.00[EUR][1000 genomes]
rs7749798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7767373	1.00[EUR][1000 genomes]
rs9481972	1.00[EUR][1000 genomes]
rs9489829	1.00[EUR][1000 genomes]
rs9489830	1.00[EUR][1000 genomes]
rs9489832	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv886572	chr6:120165475-120284480	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120177800-120184000	Weak transcription	HMEC	breast
2	chr6:120180200-120183800	Weak transcription	NHEK	skin
3	chr6:120180400-120184000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:120182400-120185200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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