Variant report

Variant	rs7745021
Chromosome Location	chr6:54826388-54826389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs6902245	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs6922186	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs6926997	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs6929930	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7744592	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9349740	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9370345	0.81[EUR][1000 genomes]
rs9382403	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54826000-54826400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:54826000-54826600	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr6:54826000-54827000	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr6:54826200-54826600	Active TSS	H9 Cell Line	embryonic stem cell
5	chr6:54826200-54826600	Active TSS	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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