Variant report
Variant | rs774548 |
---|---|
Chromosome Location | chr3:98736869-98736870 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr2:75887719..75888507-chr3:98736202..98737122,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1082398 | 0.94[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs1082399 | 0.90[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs1082400 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs1082402 | 0.94[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs1082404 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs1082406 | 0.94[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs1351496 | 1.00[EUR][1000 genomes] |
rs1383908 | 1.00[EUR][1000 genomes] |
rs1481633 | 0.94[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs1531736 | 1.00[EUR][1000 genomes] |
rs2448985 | 0.87[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs2470820 | 0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs2470828 | 0.90[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs2470850 | 0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs2929491 | 0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs4857107 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs73858658 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs774536 | 0.94[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs774543 | 0.97[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs774546 | 0.97[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs974982 | 0.91[AFR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv591065 | chr3:98204198-98766326 | Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
2 | nsv1007140 | chr3:98421229-99202458 | Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
3 | nsv536663 | chr3:98421229-99202458 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
4 | nsv877214 | chr3:98445324-98738006 | Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
5 | nsv1007486 | chr3:98597738-99249081 | Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
6 | nsv980100 | chr3:98714787-98766962 | Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:98726600-98740400 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
2 | chr3:98736000-98737200 | Weak transcription | Aorta | Aorta |