Variant report

Variant	rs7746325
Chromosome Location	chr6:44673855-44673856
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1075269	1.00[AMR][1000 genomes]
rs1293466	1.00[AMR][1000 genomes]
rs1296044	1.00[AMR][1000 genomes]
rs1299349	1.00[AMR][1000 genomes]
rs1299350	1.00[AMR][1000 genomes]
rs2040031	1.00[AMR][1000 genomes]
rs538864	1.00[AMR][1000 genomes]
rs60957511	1.00[AMR][1000 genomes]
rs6458411	1.00[AMR][1000 genomes]
rs683225	1.00[AMR][1000 genomes]
rs6907269	1.00[AMR][1000 genomes]
rs6908089	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6929962	1.00[AMR][1000 genomes]
rs6934375	1.00[AMR][1000 genomes]
rs6935625	1.00[AMR][1000 genomes]
rs7739462	1.00[AMR][1000 genomes]
rs7740412	1.00[AMR][1000 genomes]
rs7744133	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7757088	1.00[AMR][1000 genomes]
rs947634	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817071	chr6:44670110-44698829	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44667200-44691000	Weak transcription	Right Atrium	heart
2	chr6:44670400-44679200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:44670400-44679600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:44673800-44674000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:44673800-44674000	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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