Variant report

Variant	rs7746972
Chromosome Location	chr6:69850294-69850295
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1482327	0.92[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1482332	0.87[AFR][1000 genomes]
rs1912987	0.92[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1912988	0.92[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2343260	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs314204	0.85[EUR][1000 genomes]
rs314213	0.85[EUR][1000 genomes]
rs314218	0.85[EUR][1000 genomes]
rs67807	0.85[EUR][1000 genomes]
rs7739401	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9363987	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9454701	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2754259	chr6:69825681-69858930	Enhancers Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69847800-69850400	Enhancers	Fetal Heart	heart
2	chr6:69850000-69852200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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