Variant report

Variant	rs7747601
Chromosome Location	chr6:132276904-132276905
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132269655-132282174..6:132454814-132459405	GM12878	blood:
2	6:132269655-132282174..6:132434977-132438109	Hela-S3	cervix:
3	6:132269655-132282174..6:132402790-132406656	H1-hESC	embryonic stem cell:	embryo
4	6:132269655-132282174..6:132480387-132483283	H1-hESC	embryonic stem cell:	embryo
5	chr6:132270832..132274014-chr6:132274409..132278281,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236166	Chromatin interaction
ENSG00000118523	Chromatin interaction
ENSG00000265669	Chromatin interaction
ENSG00000227220	Chromatin interaction
ENSG00000228495	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs7748518	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768619	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9402373	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132272600-132279400	Weak transcription	Pancreas	Pancrea
2	chr6:132272800-132277200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:132273000-132277200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:132273000-132277400	Enhancers	H9 Cell Line	embryonic stem cell
5	chr6:132273000-132277400	Enhancers	Stomach Mucosa	stomach
6	chr6:132273000-132278800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:132273000-132279400	Enhancers	HepG2	liver
8	chr6:132273200-132277000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:132273200-132277000	Enhancers	NHLF	lung
10	chr6:132273200-132277200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:132273200-132277400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:132273200-132277400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr6:132273800-132277000	Enhancers	H1 Cell Line	embryonic stem cell
14	chr6:132274600-132277200	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr6:132274600-132277600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr6:132274800-132277400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr6:132274800-132277400	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr6:132274800-132277400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr6:132274800-132277400	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr6:132275000-132277000	Enhancers	Fetal Lung	lung
21	chr6:132275200-132277000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr6:132275400-132277000	Enhancers	Fetal Intestine Small	intestine
23	chr6:132275600-132299800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:132275800-132277000	Enhancers	Osteobl	bone
25	chr6:132275800-132279400	Weak transcription	HSMM	muscle
26	chr6:132275800-132279400	Weak transcription	HSMMtube	muscle
27	chr6:132276000-132277000	Enhancers	Fetal Heart	heart
28	chr6:132276200-132277000	Enhancers	Fetal Kidney	kidney
29	chr6:132276200-132277400	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr6:132276200-132279400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:132276200-132279800	Weak transcription	Duodenum Mucosa	Duodenum
32	chr6:132276200-132280400	Weak transcription	Colonic Mucosa	Colon
33	chr6:132276200-132287400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr6:132276400-132277000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:132276400-132277400	Enhancers	HUVEC	blood vessel
36	chr6:132276400-132279400	Weak transcription	Fetal Intestine Large	intestine
37	chr6:132276400-132281800	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr6:132276400-132282000	Weak transcription	Aorta	Aorta
39	chr6:132276600-132277000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:132276600-132277000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr6:132276600-132297800	Weak transcription	Ovary	ovary
42	chr6:132276800-132277000	Enhancers	A549	lung
43	chr6:132276800-132277200	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr6:132276800-132279400	Weak transcription	Rectal Mucosa Donor 29	rectum

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