Variant report

Variant	rs7747978
Chromosome Location	chr6:36525321-36525322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36523233..36527454-chr6:36560402..36564632,7	MCF-7	breast:
2	chr6:36524472..36526029-chr6:36572608..36574439,2	MCF-7	breast:
3	chr6:36522642..36525654-chr6:36546165..36549998,4	MCF-7	breast:
4	chr6:36525207..36527489-chr6:36560821..36563738,6	MCF-7	breast:
5	chr6:36523665..36533327-chr6:36560183..36564350,15	K562	blood:
6	chr6:36524883..36528605-chr6:36543628..36546021,5	MCF-7	breast:
7	chr6:36524459..36530212-chr6:36535986..36541139,5	MCF-7	breast:
8	chr6:36510007..36526277-chr6:36558145..36566762,35	K562	blood:
9	chr6:36513276..36517256-chr6:36524095..36526073,4	K562	blood:
10	chr6:36512337..36518540-chr6:36522888..36526719,9	MCF-7	breast:
11	chr6:36524196..36527132-chr6:36635202..36638000,2	MCF-7	breast:
12	chr6:36514605..36517306-chr6:36524573..36526525,2	K562	blood:
13	chr6:36524973..36526620-chr6:36564386..36565932,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16888788	0.92[AMR][1000 genomes]
rs2267930	0.82[AMR][1000 genomes]
rs2273882	0.82[AMR][1000 genomes]
rs3819759	0.87[AMR][1000 genomes]
rs4236051	0.82[AMR][1000 genomes]
rs4713977	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36522800-36526600	Weak transcription	Adipose Nuclei	Adipose
2	chr6:36523000-36527000	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr6:36523400-36528400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:36523800-36525400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr6:36524000-36529600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:36524200-36525600	Weak transcription	Hela-S3	cervix
7	chr6:36524600-36525800	Enhancers	A549	lung
8	chr6:36524800-36527600	Weak transcription	Primary B cells from cord blood	blood
9	chr6:36525000-36525600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:36525200-36525800	Enhancers	Placenta	Placenta
11	chr6:36525200-36526400	Enhancers	Stomach Mucosa	stomach
12	chr6:36525200-36526800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:36525200-36531400	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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