Variant report

Variant	rs7748155
Chromosome Location	chr6:128691353-128691354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10428737	0.94[ASW][hapmap];0.83[YRI][hapmap]
rs1416517	0.93[YRI][hapmap]
rs17055854	0.94[ASW][hapmap];0.83[YRI][hapmap]
rs1891146	0.83[YRI][hapmap]
rs1891147	0.82[YRI][hapmap]
rs2027311	0.93[YRI][hapmap]
rs4449645	0.84[EUR][1000 genomes]
rs6939023	0.88[ASW][hapmap]
rs722796	0.83[YRI][hapmap]
rs72974039	0.86[EUR][1000 genomes]
rs72974041	0.85[EUR][1000 genomes]
rs7743537	0.90[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7764930	1.00[ASW][hapmap];0.91[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs7774606	0.83[EUR][1000 genomes]
rs9372888	0.93[YRI][hapmap]
rs9375564	0.85[EUR][1000 genomes]
rs946424	0.95[CEU][hapmap];0.83[YRI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1020071	chr6:128579774-129048919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv538441	chr6:128579774-129048919	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128678800-128697000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:128679600-128732000	Weak transcription	Left Ventricle	heart
3	chr6:128679800-128697600	Weak transcription	HSMMtube	muscle
4	chr6:128680000-128691400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:128681800-128695600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:128684600-128696600	Weak transcription	HSMM	muscle
7	chr6:128684800-128696400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:128686200-128692600	Enhancers	HepG2	liver
9	chr6:128686600-128696600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:128686800-128695400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:128687000-128693000	Enhancers	Fetal Intestine Large	intestine
12	chr6:128687000-128693000	Enhancers	Fetal Intestine Small	intestine
13	chr6:128688200-128692000	Enhancers	HUVEC	blood vessel
14	chr6:128688200-128697000	Weak transcription	Colonic Mucosa	Colon
15	chr6:128688600-128692200	Enhancers	Brain Hippocampus Middle	brain
16	chr6:128688800-128697200	Weak transcription	Pancreas	Pancrea
17	chr6:128688800-128697200	Weak transcription	HMEC	breast
18	chr6:128688800-128706800	Weak transcription	Gastric	stomach
19	chr6:128688800-128738800	Weak transcription	Psoas Muscle	Psoas
20	chr6:128689200-128691600	Enhancers	Brain Anterior Caudate	brain
21	chr6:128689400-128691600	Enhancers	A549	lung
22	chr6:128689400-128692200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:128689800-128693800	Weak transcription	Colon Smooth Muscle	Colon
24	chr6:128690000-128692000	Weak transcription	Fetal Heart	heart
25	chr6:128690000-128696400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:128690000-128697200	Weak transcription	Ovary	ovary
27	chr6:128690000-128697200	Weak transcription	NHEK	skin
28	chr6:128690000-128704400	Weak transcription	Rectal Smooth Muscle	rectum
29	chr6:128690400-128691400	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr6:128690400-128701800	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr6:128690600-128692800	Enhancers	Brain Substantia Nigra	brain
32	chr6:128690800-128691600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr6:128690800-128692400	Enhancers	Duodenum Mucosa	Duodenum
34	chr6:128690800-128692400	Enhancers	NHDF-Ad	bronchial
35	chr6:128691000-128691400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr6:128691000-128691400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr6:128691000-128691600	Enhancers	Muscle Satellite Cultured Cells	--
38	chr6:128691000-128691600	Enhancers	Liver	Liver
39	chr6:128691000-128691600	Enhancers	Stomach Smooth Muscle	stomach
40	chr6:128691000-128691600	Enhancers	NHLF	lung
41	chr6:128691000-128691600	Enhancers	Osteobl	bone
42	chr6:128691000-128691800	Enhancers	Fetal Lung	lung
43	chr6:128691000-128692400	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr6:128691000-128692600	Weak transcription	Stomach Mucosa	stomach
45	chr6:128691200-128691400	Enhancers	Small Intestine	intestine
46	chr6:128691200-128691600	Enhancers	NH-A	brain
47	chr6:128691200-128711200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links