Variant report

Variant	rs774854
Chromosome Location	chr3:111688578-111688579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111687384..111693123-chr3:111694122..111699729,7	MCF-7	breast:
2	chr3:111687115..111689954-chr3:111695002..111696517,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144827	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs529159	1.00[CEU][hapmap];0.88[CHB][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs581126	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs774745	0.89[CHB][hapmap];0.90[CHD][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs774854	CD200	cis	parietal	SCAN

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111637200-111690600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:111642200-111690400	Weak transcription	Spleen	Spleen
3	chr3:111645400-111689600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr3:111654400-111695000	Strong transcription	Placenta	Placenta
5	chr3:111658600-111697400	Weak transcription	Gastric	stomach
6	chr3:111661600-111689800	Weak transcription	Ovary	ovary
7	chr3:111666600-111697400	Weak transcription	Esophagus	oesophagus
8	chr3:111673000-111697400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:111673000-111697400	Weak transcription	Pancreas	Pancrea
10	chr3:111675000-111697400	Weak transcription	Lung	lung
11	chr3:111678200-111692800	Weak transcription	Aorta	Aorta
12	chr3:111681200-111689800	Weak transcription	Thymus	Thymus
13	chr3:111681400-111694400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:111681400-111697200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr3:111681400-111697400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr3:111682400-111689800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:111682400-111694600	Strong transcription	NH-A	brain
18	chr3:111682600-111690800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr3:111683000-111695200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:111685400-111688600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr3:111685400-111697400	Weak transcription	Fetal Brain Male	brain
22	chr3:111685800-111691000	Enhancers	Fetal Lung	lung
23	chr3:111686400-111694000	Strong transcription	HMEC	breast
24	chr3:111686400-111694600	Strong transcription	NHEK	skin
25	chr3:111686400-111697200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr3:111686400-111697200	Weak transcription	Fetal Intestine Small	intestine
27	chr3:111686600-111689400	Strong transcription	HSMMtube	muscle
28	chr3:111686600-111689800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr3:111686600-111691600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr3:111686600-111694000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr3:111686600-111697200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr3:111686600-111697200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr3:111686600-111697200	Weak transcription	Fetal Intestine Large	intestine
34	chr3:111686600-111697200	Weak transcription	HepG2	liver
35	chr3:111686600-111697400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr3:111686600-111697400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr3:111686600-111697400	Weak transcription	Colon Smooth Muscle	Colon
38	chr3:111686600-111697400	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr3:111686800-111688800	Strong transcription	Left Ventricle	heart
40	chr3:111686800-111690800	Strong transcription	Muscle Satellite Cultured Cells	--
41	chr3:111686800-111690800	Strong transcription	Fetal Muscle Trunk	muscle
42	chr3:111686800-111694000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr3:111686800-111697200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr3:111687000-111689200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr3:111687000-111689400	Strong transcription	A549	lung
46	chr3:111687000-111689800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr3:111687000-111690200	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr3:111687000-111690600	Strong transcription	Hela-S3	cervix
49	chr3:111687000-111694000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr3:111687000-111694000	Strong transcription	Adipose Nuclei	Adipose

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