Variant report

Variant	rs7748741
Chromosome Location	chr6:15483498-15483499
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15244637..15246523-chr6:15482002..15484249,2	MCF-7	breast:
2	chr6:15444974..15446606-chr6:15481523..15484287,2	K562	blood:
3	chr6:15209931..15211902-chr6:15481074..15483809,2	K562	blood:
4	chr6:15483229..15486068-chr6:15489614..15491902,2	MCF-7	breast:
5	chr6:15474274..15478303-chr6:15480821..15484291,4	K562	blood:

Variant related genes	Relation type
ENSG00000271888	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1546851	1.00[ASN][1000 genomes]
rs2049950	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2049951	1.00[ASN][1000 genomes]
rs2049952	1.00[ASN][1000 genomes]
rs2064097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2064098	0.98[ASN][1000 genomes]
rs2064100	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2179167	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2179168	0.80[JPT][hapmap]
rs2237111	0.88[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs2237112	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2237114	0.93[ASN][1000 genomes]
rs2237115	0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2237122	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2237125	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2237126	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2237127	0.83[CHB][hapmap];1.00[ASN][1000 genomes]
rs2237128	1.00[ASN][1000 genomes]
rs2237129	1.00[ASN][1000 genomes]
rs2237130	1.00[CEU][hapmap];0.80[JPT][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2237131	1.00[ASN][1000 genomes]
rs2237134	0.96[CEU][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2237135	0.96[CEU][hapmap];0.80[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2237136	0.96[CEU][hapmap];0.80[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2237137	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2237143	0.80[JPT][hapmap]
rs2251828	1.00[ASN][1000 genomes]
rs2282818	0.88[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs2282822	1.00[ASN][1000 genomes]
rs2282824	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299037	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2299038	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299040	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299041	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299042	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35720984	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3819398	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4712252	0.98[ASN][1000 genomes]
rs4715976	0.96[CEU][hapmap];0.80[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6912499	1.00[ASN][1000 genomes]
rs6929454	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs727734	1.00[ASN][1000 genomes]
rs760660	0.92[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7763809	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs926309	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9370814	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9383058	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9396587	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15435800-15487600	Weak transcription	Colonic Mucosa	Colon
2	chr6:15458400-15484200	Weak transcription	Small Intestine	intestine
3	chr6:15461600-15491000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:15471000-15488200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:15471000-15502000	Weak transcription	A549	lung
6	chr6:15471400-15488200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:15472000-15484200	Weak transcription	Liver	Liver
8	chr6:15476000-15487400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:15476200-15486600	Weak transcription	Dnd41	blood
10	chr6:15476200-15487200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:15476400-15487200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:15476600-15486600	Weak transcription	GM12878-XiMat	blood
13	chr6:15476600-15487000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr6:15476600-15487200	Weak transcription	Fetal Intestine Large	intestine
15	chr6:15476800-15484200	Weak transcription	Fetal Intestine Small	intestine
16	chr6:15476800-15487000	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr6:15476800-15487600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:15477600-15486200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:15477600-15487400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr6:15477600-15487600	Weak transcription	HepG2	liver
21	chr6:15478200-15487600	Weak transcription	Ovary	ovary
22	chr6:15478400-15484400	Weak transcription	Aorta	Aorta
23	chr6:15478400-15485800	Weak transcription	Colon Smooth Muscle	Colon
24	chr6:15478400-15487600	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr6:15478600-15484000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:15478600-15487400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr6:15478800-15486400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:15479400-15486200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr6:15480000-15483600	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr6:15480200-15484400	Weak transcription	Pancreas	Pancrea
31	chr6:15480200-15486200	Weak transcription	Primary B cells from cord blood	blood
32	chr6:15480200-15486200	Weak transcription	Lung	lung
33	chr6:15480200-15486200	Weak transcription	Right Ventricle	heart
34	chr6:15480200-15487400	Weak transcription	Esophagus	oesophagus
35	chr6:15480200-15487400	Weak transcription	Stomach Smooth Muscle	stomach
36	chr6:15480400-15484400	Weak transcription	Gastric	stomach
37	chr6:15480400-15484800	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr6:15480400-15486000	Weak transcription	Primary B cells from peripheral blood	blood
39	chr6:15480400-15486200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:15480400-15486200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr6:15480400-15487200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:15480400-15487200	Weak transcription	Brain Anterior Caudate	brain
43	chr6:15480400-15487400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr6:15480400-15487400	Weak transcription	Adipose Nuclei	Adipose
45	chr6:15480400-15487800	Weak transcription	NHLF	lung
46	chr6:15480400-15488200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr6:15480400-15490600	Weak transcription	NHDF-Ad	bronchial
48	chr6:15480600-15485600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr6:15480600-15485600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr6:15480600-15488400	Weak transcription	NH-A	brain

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