Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10455809	0.87[CEU][hapmap]
rs10455977	0.94[CEU][hapmap]
rs10946151	0.86[AMR][1000 genomes]
rs10946155	0.81[JPT][hapmap]
rs10946160	0.82[CEU][hapmap]
rs11752886	0.87[CEU][hapmap]
rs11753652	0.82[CEU][hapmap]
rs11755305	0.82[CEU][hapmap]
rs12198613	0.91[CEU][hapmap]
rs12214812	0.87[CEU][hapmap]
rs2294335	0.83[CEU][hapmap]
rs4144886	0.87[CEU][hapmap]
rs4144887	0.87[CEU][hapmap]
rs4144888	0.87[CEU][hapmap]
rs6932631	0.91[CEU][hapmap];0.89[JPT][hapmap]
rs7748437	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759603	0.97[ASN][1000 genomes]
rs7763448	0.97[ASN][1000 genomes]
rs9347119	0.92[ASN][1000 genomes]
rs9347120	0.93[ASN][1000 genomes]
rs9348115	0.81[EUR][1000 genomes]
rs9348116	0.81[EUR][1000 genomes]
rs9365997	0.92[ASN][1000 genomes]
rs9365998	0.93[ASN][1000 genomes]
rs9365999	0.93[ASN][1000 genomes]
rs941683	0.87[CEU][hapmap]
rs999234	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886934	chr6:166642850-166747572	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv886935	chr6:166704744-166726566	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs7748966	LOC401284	cis	multi-tissue	Pritchard
rs7748966	BRP44L	cis	parietal	SCAN
rs7748966	CCR6	cis	parietal	SCAN
rs7748966	LOC135043	cis	multi-tissue	Pritchard
rs7748966	PRR18	cis	lymphoblastoid	seeQTL
rs7748966		cis	Lymphoblastoid	GTEx
rs7748966	SFT2D1	Cis_1M	lymphoblastoid	RTeQTL
rs7748966	MGC35308	cis	multi-tissue	Pritchard

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166705800-166709400	Enhancers	Brain Cingulate Gyrus	brain
2	chr6:166706000-166711000	Enhancers	Brain Substantia Nigra	brain
3	chr6:166706200-166710600	Enhancers	Brain Angular Gyrus	brain
4	chr6:166706400-166709400	Enhancers	Brain Hippocampus Middle	brain
5	chr6:166706600-166709600	Enhancers	Brain Anterior Caudate	brain
6	chr6:166707800-166709400	Enhancers	Primary B cells from cord blood	blood
7	chr6:166707800-166709400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr6:166708200-166712000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:166709000-166709800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:166709200-166709800	Enhancers	Primary hematopoietic stem cells	blood

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