Variant report

Variant	rs7749353
Chromosome Location	chr6:28611897-28611898
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs34518109	1.00[EUR][1000 genomes]
rs6931328	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv1031671	chr6:28575172-28678126	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28610800-28612000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:28610800-28612200	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr6:28610800-28612200	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr6:28611000-28612000	Active TSS	A549	lung
5	chr6:28611000-28612000	Active TSS	Hela-S3	cervix
6	chr6:28611000-28612200	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr6:28611000-28612200	Active TSS	H1 Cell Line	embryonic stem cell
8	chr6:28611000-28612200	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr6:28611000-28612200	Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr6:28611000-28612200	Active TSS	iPS-18 Cell Line	embryonic stem cell
11	chr6:28611000-28612200	Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr6:28611200-28612000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:28611200-28612000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:28611200-28612000	Active TSS	NHEK	skin
15	chr6:28611200-28612200	Active TSS	H9 Cell Line	embryonic stem cell
16	chr6:28611400-28612200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
17	chr6:28611400-28613600	Weak transcription	HepG2	liver
18	chr6:28611600-28616000	Weak transcription	K562	blood
19	chr6:28611800-28612200	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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