Variant report

Variant	rs7750774
Chromosome Location	chr6:139774387-139774388
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12110500	1.00[EUR][1000 genomes]
rs57498358	1.00[EUR][1000 genomes]
rs60014761	1.00[EUR][1000 genomes]
rs6899949	1.00[EUR][1000 genomes]
rs7773821	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518835	chr6:139770067-139800892	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139771800-139774400	Weak transcription	Fetal Kidney	kidney
2	chr6:139773200-139774400	Enhancers	NHEK	skin
3	chr6:139773200-139774600	Enhancers	Hela-S3	cervix
4	chr6:139773400-139774600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:139773400-139774600	Enhancers	HMEC	breast
6	chr6:139774000-139778400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:139774000-139778800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links