Variant report

Variant	rs7751076
Chromosome Location	chr6:3980472-3980473
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12524454	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12525919	0.87[AFR][1000 genomes]
rs17137399	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4959266	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4959912	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532020	chr6:3417520-4140257	Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1022968	chr6:3862744-4272502	Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv538106	chr6:3862744-4272502	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:3964800-3987400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:3976400-3990800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:3978400-3987200	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:3978600-3986800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:3978600-3991000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr6:3978600-3991000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:3978800-3987200	Weak transcription	Fetal Stomach	stomach
8	chr6:3978800-3991000	Weak transcription	Primary B cells from peripheral blood	blood
9	chr6:3978800-3991000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr6:3978800-3991000	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr6:3979000-3982200	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr6:3979000-3986800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:3979000-3987000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:3979000-3990600	Weak transcription	Colon Smooth Muscle	Colon
15	chr6:3979000-3990800	Weak transcription	HSMM	muscle
16	chr6:3979000-3991000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:3979000-4003200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr6:3979200-3990600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:3979200-3991000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr6:3979400-3986800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:3979400-3986800	Weak transcription	Adipose Nuclei	Adipose
22	chr6:3979400-3990800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:3979800-3987200	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr6:3980000-3982200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:3980000-3986800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:3980200-3984200	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr6:3980400-3987600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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