Variant report

Variant	rs7751107
Chromosome Location	chr6:5619688-5619689
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:5618499..5620610-chr6:5626693..5628979,2	K562	blood:
2	chr6:5609969..5611663-chr6:5617459..5619947,2	K562	blood:
3	chr6:5618457..5621513-chr6:5623126..5626638,4	K562	blood:

Variant related genes	Relation type
ENSG00000218574	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11755552	0.93[ASN][1000 genomes]
rs11756138	0.93[ASN][1000 genomes]
rs11962015	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17133295	0.93[ASN][1000 genomes]
rs1983564	0.87[ASN][1000 genomes]
rs2064106	0.93[ASN][1000 genomes]
rs2064107	0.93[ASN][1000 genomes]
rs4323358	0.87[ASN][1000 genomes]
rs55762144	0.93[ASN][1000 genomes]
rs56276929	0.93[ASN][1000 genomes]
rs57607452	0.93[ASN][1000 genomes]
rs60671092	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61526984	0.93[ASN][1000 genomes]
rs6904473	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911625	0.93[ASN][1000 genomes]
rs6918207	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6935073	0.93[ASN][1000 genomes]
rs6936430	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72817799	0.93[ASN][1000 genomes]
rs760676	0.93[ASN][1000 genomes]
rs760677	0.93[ASN][1000 genomes]
rs7738833	0.93[ASN][1000 genomes]
rs7769150	0.93[ASN][1000 genomes]
rs926312	0.93[ASN][1000 genomes]
rs9378974	0.97[EUR][1000 genomes]
rs9502321	0.81[ASN][1000 genomes]
rs9502322	0.93[ASN][1000 genomes]
rs9504442	0.87[ASN][1000 genomes]
rs9504443	0.93[ASN][1000 genomes]
rs9504444	0.93[ASN][1000 genomes]
rs9504445	0.93[ASN][1000 genomes]
rs9504447	0.93[ASN][1000 genomes]
rs9504448	0.93[ASN][1000 genomes]
rs9504449	0.93[ASN][1000 genomes]
rs9504450	0.93[ASN][1000 genomes]
rs9504451	0.93[ASN][1000 genomes]
rs9504452	0.93[ASN][1000 genomes]
rs9504454	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019428	chr6:5216835-5627839	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538118	chr6:5216835-5627839	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv916361	chr6:5315853-5695486	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv600887	chr6:5545046-5694713	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1016905	chr6:5566364-5639167	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1015549	chr6:5593965-5630468	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5577400-5639800	Weak transcription	Fetal Intestine Small	intestine
2	chr6:5581000-5640400	Weak transcription	Gastric	stomach
3	chr6:5590800-5622000	Weak transcription	Right Atrium	heart
4	chr6:5591600-5626400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:5593400-5621000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:5610400-5620200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:5610600-5641000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:5612200-5622200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:5612400-5628000	Weak transcription	Fetal Intestine Large	intestine
10	chr6:5612600-5640000	Weak transcription	Fetal Stomach	stomach
11	chr6:5612800-5626800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr6:5613000-5627200	Weak transcription	Adipose Nuclei	Adipose
13	chr6:5613200-5640400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:5613600-5627000	Weak transcription	Dnd41	blood
15	chr6:5614400-5639000	Weak transcription	Lung	lung
16	chr6:5614600-5621200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr6:5614600-5626800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:5614600-5628200	Weak transcription	Ovary	ovary
19	chr6:5614600-5636600	Weak transcription	Pancreas	Pancrea
20	chr6:5614600-5640000	Weak transcription	Duodenum Mucosa	Duodenum
21	chr6:5614600-5640400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:5615600-5624200	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr6:5616200-5627000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:5617800-5625600	Weak transcription	Fetal Muscle Leg	muscle
25	chr6:5618600-5622800	Weak transcription	Left Ventricle	heart
26	chr6:5618800-5620400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr6:5618800-5624000	Weak transcription	Right Ventricle	heart
28	chr6:5619000-5620000	Enhancers	Primary B cells from peripheral blood	blood
29	chr6:5619000-5620200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr6:5619000-5620400	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr6:5619000-5620600	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr6:5619200-5619800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr6:5619200-5619800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
34	chr6:5619200-5619800	Enhancers	Thymus	Thymus
35	chr6:5619200-5620000	Enhancers	Fetal Thymus	thymus
36	chr6:5619200-5620200	Enhancers	Primary T cells fromperipheralblood	blood
37	chr6:5619200-5620200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr6:5619200-5620200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr6:5619200-5620400	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr6:5619200-5620600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
41	chr6:5619400-5619800	Flanking Active TSS	Primary T cells from cord blood	blood
42	chr6:5619400-5619800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
43	chr6:5619400-5620000	Enhancers	Primary B cells from cord blood	blood
44	chr6:5619400-5624000	Weak transcription	Fetal Heart	heart
45	chr6:5619600-5620000	Enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr6:5619600-5620000	Enhancers	GM12878-XiMat	blood
47	chr6:5619600-5620400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr6:5619600-5621200	Strong transcription	Aorta	Aorta
49	chr6:5619600-5627200	Weak transcription	Monocytes-CD14+_RO01746	blood

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