Variant report

Variant	rs7751667
Chromosome Location	chr6:77254984-77254985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1038750	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10455318	0.83[EUR][1000 genomes]
rs11970502	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12216458	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13195534	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1387843	0.86[EUR][1000 genomes]
rs1387851	0.85[EUR][1000 genomes]
rs1490209	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1490210	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1490213	0.84[EUR][1000 genomes]
rs1490220	0.83[EUR][1000 genomes]
rs1532134	0.84[EUR][1000 genomes]
rs1844553	0.81[EUR][1000 genomes]
rs4088862	0.81[EUR][1000 genomes]
rs4336415	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4337905	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4478374	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4583941	0.83[EUR][1000 genomes]
rs4706618	0.86[EUR][1000 genomes]
rs4708267	0.86[EUR][1000 genomes]
rs5009482	0.84[EUR][1000 genomes]
rs6453899	0.86[EUR][1000 genomes]
rs6453900	0.87[EUR][1000 genomes]
rs6453912	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6453913	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6903382	0.82[EUR][1000 genomes]
rs6907510	0.83[EUR][1000 genomes]
rs6908025	0.82[EUR][1000 genomes]
rs6912505	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6918357	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6918707	0.84[EUR][1000 genomes]
rs6924853	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6928036	0.83[EUR][1000 genomes]
rs6928328	0.81[EUR][1000 genomes]
rs7744721	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7745942	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7747109	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754981	0.86[EUR][1000 genomes]
rs7773888	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs867868	0.83[EUR][1000 genomes]
rs9341581	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9343441	0.82[EUR][1000 genomes]
rs9343442	0.83[EUR][1000 genomes]
rs9343463	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9350655	0.86[EUR][1000 genomes]
rs9350660	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9352325	0.83[EUR][1000 genomes]
rs9352336	0.86[EUR][1000 genomes]
rs9359202	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9361057	0.83[EUR][1000 genomes]
rs9443242	0.85[EUR][1000 genomes]
rs9443251	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9447697	0.85[EUR][1000 genomes]
rs9447698	0.85[EUR][1000 genomes]
rs9447718	0.94[EUR][1000 genomes]
rs9447726	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025439	chr6:77093795-77479689	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv538320	chr6:77093795-77479689	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv886205	chr6:77103194-77266188	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830699	chr6:77111857-77291223	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv886207	chr6:77130167-77266188	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv886208	chr6:77130167-77317683	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv886210	chr6:77192263-77317683	Active TSS Genic enhancers Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv886211	chr6:77208816-77317683	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv886212	chr6:77208816-77340148	Weak transcription Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv886213	chr6:77212059-77317683	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv830700	chr6:77246037-77382238	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv886214	chr6:77247004-77317683	ZNF genes & repeats Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77245200-77257800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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