Variant report

Variant	rs7751675
Chromosome Location	chr6:24838580-24838581
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:24832929..24835372-chr6:24837163..24838667,2	K562	blood:
2	chr6:24837779..24840617-chr6:24842334..24845035,3	K562	blood:
3	chr6:24837779..24840542-chr6:24842334..24844134,2	K562	blood:

Variant related genes	Relation type
ENSG00000111913	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16889632	0.89[EUR][1000 genomes]
rs34016544	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34298086	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45619241	0.90[EUR][1000 genomes]
rs58233236	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61733143	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6899341	0.89[EUR][1000 genomes]
rs6917709	0.82[EUR][1000 genomes]
rs6940247	0.89[EUR][1000 genomes]
rs73396489	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73396497	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73398404	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73398412	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9467275	0.89[EUR][1000 genomes]
rs9467329	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830609	chr6:24712086-24896647	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv508396	chr6:24779648-24846309	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24777000-24847600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:24777000-24859600	Weak transcription	Psoas Muscle	Psoas
3	chr6:24788800-24848200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:24789200-24842600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:24798200-24841200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:24800000-24843200	Weak transcription	Liver	Liver
7	chr6:24804800-24858200	Weak transcription	Gastric	stomach
8	chr6:24806200-24842400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr6:24808800-24845600	Weak transcription	Fetal Stomach	stomach
10	chr6:24809800-24839200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:24817800-24839600	Strong transcription	Primary T cells from cord blood	blood
12	chr6:24817800-24840800	Strong transcription	Primary B cells from peripheral blood	blood
13	chr6:24817800-24854400	Strong transcription	Primary B cells from cord blood	blood
14	chr6:24817800-24855800	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr6:24818000-24840000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr6:24818000-24840600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr6:24818000-24840600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:24818600-24855800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr6:24818800-24856000	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr6:24818800-24856400	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr6:24822400-24840200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:24822600-24844000	Weak transcription	Fetal Heart	heart
23	chr6:24827800-24840800	Weak transcription	Lung	lung
24	chr6:24828000-24840600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:24828000-24842600	Weak transcription	Dnd41	blood
26	chr6:24828400-24840600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:24830400-24855800	Weak transcription	Stomach Smooth Muscle	stomach
28	chr6:24831000-24841200	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr6:24832200-24839200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:24832400-24859600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr6:24833000-24839400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:24833000-24857800	Weak transcription	Brain Angular Gyrus	brain
33	chr6:24833200-24845400	Weak transcription	NHDF-Ad	bronchial
34	chr6:24833400-24840400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr6:24833400-24841000	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr6:24834600-24844400	Weak transcription	Brain Hippocampus Middle	brain
37	chr6:24834600-24851600	Weak transcription	HSMM	muscle
38	chr6:24834800-24840400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr6:24834800-24840400	Weak transcription	GM12878-XiMat	blood
40	chr6:24835000-24840600	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr6:24835200-24839000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr6:24835400-24840400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr6:24835400-24843200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr6:24836000-24857200	Weak transcription	Fetal Brain Female	brain
45	chr6:24836200-24839400	Weak transcription	Brain Anterior Caudate	brain
46	chr6:24836200-24840400	Weak transcription	Thymus	Thymus
47	chr6:24836200-24845800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr6:24836200-24847600	Weak transcription	Left Ventricle	heart
49	chr6:24836400-24839400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr6:24836600-24844400	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links