Variant report

Variant	rs77522280
Chromosome Location	chr6:5706111-5706112
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:5704687..5707322-chr6:5708946..5711451,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3473790	chr6:5692573-5707035	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3473791	chr6:5692573-5707035	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv823407	chr6:5692735-5706712	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv981100	chr6:5703106-5706653	Weak transcription Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2761060	chr6:5705542-5710228	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5673800-5709800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:5678000-5709400	Weak transcription	Pancreas	Pancrea
3	chr6:5695800-5709800	Weak transcription	Fetal Stomach	stomach
4	chr6:5696200-5707600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:5696200-5712400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:5699400-5708000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:5699400-5713200	Weak transcription	Esophagus	oesophagus
8	chr6:5699800-5715800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:5700400-5708200	Weak transcription	Primary B cells from cord blood	blood
10	chr6:5701600-5706600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr6:5701800-5707200	Weak transcription	Spleen	Spleen
12	chr6:5701800-5708600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:5702400-5709400	Weak transcription	Fetal Lung	lung
14	chr6:5703000-5706600	Enhancers	Fetal Thymus	thymus
15	chr6:5704200-5712600	Weak transcription	Lung	lung
16	chr6:5704400-5709400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:5704800-5707800	Enhancers	Dnd41	blood
18	chr6:5705000-5716600	Weak transcription	Fetal Intestine Small	intestine
19	chr6:5705400-5706600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr6:5705400-5706600	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr6:5705400-5707400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr6:5705400-5708000	Enhancers	Primary T cells fromperipheralblood	blood
23	chr6:5705600-5706200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:5705600-5706600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:5705600-5707000	Strong transcription	Aorta	Aorta
26	chr6:5705600-5707200	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr6:5705800-5707000	Flanking Active TSS	Primary T cells from cord blood	blood
28	chr6:5705800-5707000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr6:5705800-5707200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr6:5705800-5707600	Enhancers	Thymus	Thymus
31	chr6:5706000-5706400	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr6:5706000-5706800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr6:5706000-5707400	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr6:5706000-5712200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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