Variant report

Variant	rs7752799
Chromosome Location	chr6:164187290-164187291
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10945921	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs12199352	0.93[ASN][1000 genomes]
rs1555229	0.81[JPT][hapmap]
rs2321978	0.84[CHB][hapmap]
rs2321979	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs4709769	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs7740670	0.87[JPT][hapmap]
rs7745234	0.83[ASN][1000 genomes]
rs9355441	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs9356147	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv520292	chr6:164174617-164190919	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164182200-164192000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:164184600-164188400	Enhancers	Primary T cells from cord blood	blood
3	chr6:164185000-164187800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:164185000-164188200	Enhancers	Brain Germinal Matrix	brain
5	chr6:164185800-164187400	Weak transcription	Right Ventricle	heart
6	chr6:164186000-164200600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:164186200-164187400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:164186200-164187400	Weak transcription	NHEK	skin
9	chr6:164186200-164203600	Weak transcription	Right Atrium	heart
10	chr6:164186400-164187600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr6:164187000-164192000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:164187200-164187800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr6:164187200-164187800	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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