Variant report

Variant	rs7752937
Chromosome Location	chr6:134500965-134500966
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:134496082..134497627-chr6:134499997..134501702,2	MCF-7	breast:
2	chr6:134499453..134501582-chr6:134706106..134708456,2	MCF-7	breast:
3	chr6:134499735..134502329-chr6:134850387..134852725,2	MCF-7	breast:
4	chr6:134499602..134501593-chr6:134502168..134504327,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118515	Chromatin interaction
ENSG00000232310	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs60296064	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492292	chr6:134464255-135028540	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv1026369	chr6:134468470-135122264	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv538444	chr6:134468470-135122264	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134499600-134504000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:134499600-134504000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:134499800-134503800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:134499800-134503800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:134499800-134523200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:134500000-134501000	Weak transcription	Pancreas	Pancrea
7	chr6:134500000-134502000	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:134500000-134502000	Weak transcription	HepG2	liver
9	chr6:134500000-134502200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:134500000-134502800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:134500000-134503200	Weak transcription	Brain Anterior Caudate	brain
12	chr6:134500000-134503400	Weak transcription	Brain Substantia Nigra	brain
13	chr6:134500000-134503400	Enhancers	Hela-S3	cervix
14	chr6:134500000-134503600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr6:134500000-134503600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:134500000-134503600	Weak transcription	Ovary	ovary
17	chr6:134500000-134503600	Weak transcription	K562	blood
18	chr6:134500000-134503800	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr6:134500000-134503800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr6:134500000-134503800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr6:134500000-134503800	Weak transcription	Brain Angular Gyrus	brain
22	chr6:134500000-134503800	Weak transcription	Placenta	Placenta
23	chr6:134500000-134503800	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr6:134500000-134503800	Weak transcription	Stomach Mucosa	stomach
25	chr6:134500000-134503800	Weak transcription	A549	lung
26	chr6:134500000-134512000	Weak transcription	Right Ventricle	heart
27	chr6:134500200-134502000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr6:134500200-134502200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr6:134500200-134503600	Weak transcription	Fetal Intestine Small	intestine
30	chr6:134500200-134503800	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr6:134500200-134503800	Weak transcription	Duodenum Mucosa	Duodenum
32	chr6:134500200-134504000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr6:134500200-134504600	Weak transcription	Fetal Heart	heart
34	chr6:134500200-134505000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr6:134500200-134505800	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr6:134500200-134505800	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr6:134500200-134507600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr6:134500200-134507600	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr6:134500200-134508000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr6:134500400-134503800	Weak transcription	Fetal Intestine Large	intestine
41	chr6:134500600-134504000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr6:134500600-134506200	Weak transcription	Primary T cells from cord blood	blood
43	chr6:134500800-134501200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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