Variant report

Variant	rs7753675
Chromosome Location	chr6:133658005-133658006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73776023	0.87[AFR][1000 genomes]
rs73776024	0.90[AFR][1000 genomes]
rs73776025	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886680	chr6:133613759-133663021	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133643200-133658200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:133654600-133660000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:133654600-133667800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:133655600-133658200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:133655600-133660000	Weak transcription	Psoas Muscle	Psoas
6	chr6:133657400-133660800	Enhancers	Hela-S3	cervix
7	chr6:133657600-133658400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:133658000-133659000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links