Variant report

Variant	rs7753700
Chromosome Location	chr6:140030502-140030503
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:140028951..140031620-chr6:140084219..140086898,2	K562	blood:
2	chr6:139694280..139698181-chr6:140029339..140033463,5	K562	blood:
3	chr6:139694377..139697407-chr6:140028981..140031872,3	MCF-7	breast:
4	chr6:139695139..139697062-chr6:140028740..140031054,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17069288	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv516840	chr6:139960833-140053704	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv464065	chr6:140027836-140085873	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604766	chr6:140027836-140085873	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140027800-140032000	Enhancers	Colon Smooth Muscle	Colon
2	chr6:140028400-140034200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:140028600-140033800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:140029000-140030600	Enhancers	Fetal Lung	lung
5	chr6:140029000-140030600	Enhancers	HUVEC	blood vessel
6	chr6:140029000-140030800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:140029000-140030800	Enhancers	Placenta	Placenta
8	chr6:140029000-140030800	Enhancers	Placenta Amnion	Placenta Amnion
9	chr6:140029000-140031000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:140029000-140031000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:140029000-140031000	Enhancers	Ovary	ovary
12	chr6:140029000-140032000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:140029200-140030600	Enhancers	K562	blood
14	chr6:140029200-140030600	Enhancers	NH-A	brain
15	chr6:140029200-140030600	Enhancers	NHEK	skin
16	chr6:140029200-140031000	Enhancers	Fetal Intestine Large	intestine
17	chr6:140029200-140031000	Enhancers	NHDF-Ad	bronchial
18	chr6:140029200-140031200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr6:140029200-140032200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:140029200-140033400	Enhancers	NHLF	lung
21	chr6:140029200-140034200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:140029400-140030800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:140029400-140031000	Enhancers	HepG2	liver
24	chr6:140029400-140031600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:140029600-140030600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:140029600-140030600	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr6:140029600-140030600	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr6:140029600-140030800	Enhancers	Fetal Kidney	kidney
29	chr6:140029800-140033400	Weak transcription	Stomach Mucosa	stomach
30	chr6:140030000-140031000	Weak transcription	Small Intestine	intestine
31	chr6:140030200-140031200	Enhancers	Osteobl	bone
32	chr6:140030200-140031600	Weak transcription	HSMM	muscle
33	chr6:140030200-140032200	Enhancers	Hela-S3	cervix
34	chr6:140030200-140032400	Enhancers	Fetal Heart	heart
35	chr6:140030200-140033000	Weak transcription	A549	lung
36	chr6:140030400-140031400	Weak transcription	Left Ventricle	heart
37	chr6:140030400-140031600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:140030400-140031600	Weak transcription	Right Atrium	heart
39	chr6:140030400-140032800	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr6:140030400-140032800	Weak transcription	Duodenum Mucosa	Duodenum
41	chr6:140030400-140033200	Weak transcription	Fetal Intestine Small	intestine
42	chr6:140030400-140033200	Weak transcription	HMEC	breast
43	chr6:140030400-140035200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links