Variant report
| Variant | rs7754182 |
|---|---|
| Chromosome Location | chr6:33201122-33201123 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:33200956..33202823-chr6:33213107..33215313,2 | K562 | blood: | |
| 2 | chr6:33198869..33201744-chr6:33246085..33249014,2 | MCF-7 | breast: | |
| 3 | chr6:33173001..33175712-chr6:33198390..33201223,2 | K562 | blood: | |
| 4 | chr6:33177429..33179776-chr6:33200801..33203278,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000227057 | Chromatin interaction |
| ENSG00000235863 | Chromatin interaction |
| ENSG00000272217 | Chromatin interaction |
| ENSG00000199036 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:5)
| rs_ID | r2[population] |
|---|---|
| rs6457722 | 0.85[AFR][1000 genomes] |
| rs6924701 | 0.96[AFR][1000 genomes] |
| rs73408048 | 1.00[ASN][1000 genomes] |
| rs7754193 | 0.96[AFR][1000 genomes] |
| rs7755161 | 0.92[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv462893 | chr6:33142539-33256471 | Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 104 gene(s) | inside rSNPs | diseases |
| 2 | nsv602830 | chr6:33142539-33256471 | Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 104 gene(s) | inside rSNPs | diseases |
| 3 | nsv830634 | chr6:33161217-33330745 | Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 139 gene(s) | inside rSNPs | diseases |
| 4 | nsv462894 | chr6:33174783-33254665 | Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 87 gene(s) | inside rSNPs | diseases |
| 5 | nsv602831 | chr6:33174783-33254665 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 87 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:33199200-33203000 | Weak transcription | Fetal Kidney | kidney |
