Variant report

Variant	rs7754914
Chromosome Location	chr6:39235567-39235568
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:39234576..39236394-chr6:39278908..39280593,2	MCF-7	breast:
2	chr6:39228773..39231561-chr6:39235112..39238664,3	K562	blood:
3	chr6:39233505..39239976-chr6:39262109..39267318,6	MCF-7	breast:
4	chr6:39195043..39199102-chr6:39233396..39239186,7	MCF-7	breast:
5	chr6:39235093..39238743-chr6:39267391..39271695,7	MCF-7	breast:
6	chr6:39167435..39172891-chr6:39233498..39237624,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164626	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2395718	0.97[ASN][1000 genomes]
rs58571754	0.98[ASN][1000 genomes]
rs59407364	0.98[ASN][1000 genomes]
rs6910910	0.98[ASN][1000 genomes]
rs6913790	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830644	chr6:39116530-39325980	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1022974	chr6:39120271-39277553	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv830645	chr6:39227601-39408310	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39224400-39238400	Weak transcription	Spleen	Spleen
2	chr6:39227200-39236000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:39231400-39236600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:39231800-39236000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:39231800-39236000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:39231800-39236400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:39231800-39236400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:39232000-39236000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr6:39232000-39236000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:39232000-39239800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr6:39233200-39236000	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr6:39233600-39240200	Enhancers	Placenta	Placenta
13	chr6:39234600-39236600	Enhancers	Placenta Amnion	Placenta Amnion
14	chr6:39234600-39236800	Enhancers	H9 Cell Line	embryonic stem cell
15	chr6:39234600-39237000	Enhancers	Fetal Thymus	thymus
16	chr6:39234800-39237800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:39234800-39239000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:39235000-39236000	Enhancers	Colonic Mucosa	Colon
19	chr6:39235000-39236600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr6:39235200-39235600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr6:39235400-39236800	Enhancers	Thymus	Thymus

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