Variant report

Variant	rs7756221
Chromosome Location	chr6:163818632-163818633
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163812076..163814211-chr6:163817501..163820074,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73787637	1.00[ASN][1000 genomes]
rs7754420	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1791729	chr6:163814557-163836689	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163809800-163819800	Weak transcription	Spleen	Spleen
2	chr6:163809800-163825600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:163815200-163819400	Weak transcription	HSMMtube	muscle
4	chr6:163816600-163820200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:163817600-163818800	Flanking Active TSS	Brain Hippocampus Middle	brain
6	chr6:163818000-163819400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:163818000-163819800	Weak transcription	Placenta	Placenta
8	chr6:163818000-163822200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:163818000-163822200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:163818000-163822600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:163818000-163826800	Weak transcription	Gastric	stomach
12	chr6:163818200-163818800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr6:163818200-163818800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:163818200-163818800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:163818200-163818800	Enhancers	Fetal Lung	lung
16	chr6:163818200-163818800	Enhancers	Fetal Muscle Leg	muscle
17	chr6:163818200-163818800	Enhancers	Fetal Stomach	stomach
18	chr6:163818200-163819000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:163818200-163819200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:163818200-163819600	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr6:163818200-163819600	Enhancers	NH-A	brain
22	chr6:163818200-163819800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr6:163818200-163819800	Weak transcription	Ovary	ovary
24	chr6:163818200-163819800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr6:163818200-163820000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr6:163818200-163820000	Weak transcription	Fetal Kidney	kidney
27	chr6:163818200-163820400	Enhancers	Brain Cingulate Gyrus	brain
28	chr6:163818200-163821000	Weak transcription	Esophagus	oesophagus
29	chr6:163818200-163822000	Enhancers	Adipose Nuclei	Adipose
30	chr6:163818200-163825600	Weak transcription	Lung	lung
31	chr6:163818200-163826200	Weak transcription	Duodenum Mucosa	Duodenum
32	chr6:163818200-163826800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:163818400-163818800	Enhancers	Colon Smooth Muscle	Colon
34	chr6:163818400-163818800	Enhancers	Psoas Muscle	Psoas
35	chr6:163818400-163818800	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr6:163818400-163819000	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr6:163818400-163819000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
38	chr6:163818400-163819200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr6:163818400-163819400	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr6:163818400-163819400	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr6:163818400-163819600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr6:163818400-163819600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr6:163818400-163819800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
44	chr6:163818400-163820400	Enhancers	Brain Angular Gyrus	brain
45	chr6:163818400-163825200	Weak transcription	Primary hematopoietic stem cells	blood
46	chr6:163818400-163825400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr6:163818400-163825400	Weak transcription	Right Atrium	heart
48	chr6:163818600-163818800	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr6:163818600-163818800	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr6:163818600-163818800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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