Variant report

Variant	rs7756555
Chromosome Location	chr6:140248769-140248770
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:140239712..140241213-chr6:140248206..140250375,2	K562	blood:
2	chr6:140242464..140245824-chr6:140246316..140249558,3	K562	blood:
3	chr6:140247524..140250315-chr6:140258612..140260750,2	K562	blood:
4	chr6:139693225..139698326-chr6:140245231..140252808,11	MCF-7	breast:
5	chr6:139695662..139697462-chr6:140248620..140250507,2	K562	blood:
6	chr6:140246862..140249416-chr6:140250072..140252711,2	K562	blood:
7	chr6:140202203..140203486-chr6:140248180..140248949,4	MCF-7	breast:
8	chr6:139692080..139697357-chr6:140246933..140251926,6	MCF-7	breast:
9	chr6:140247244..140249348-chr6:140253799..140256796,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1028473	0.88[EUR][1000 genomes]
rs10484810	0.85[EUR][1000 genomes]
rs10484811	1.00[EUR][1000 genomes]
rs17069431	0.84[EUR][1000 genomes]
rs17069471	0.88[EUR][1000 genomes]
rs17069474	0.88[EUR][1000 genomes]
rs17069489	0.96[EUR][1000 genomes]
rs58163971	0.84[EUR][1000 genomes]
rs59356876	0.85[EUR][1000 genomes]
rs59447619	0.88[EUR][1000 genomes]
rs73562702	1.00[EUR][1000 genomes]
rs73563220	0.84[EUR][1000 genomes]
rs73563251	0.88[EUR][1000 genomes]
rs73563272	0.88[EUR][1000 genomes]
rs73564304	1.00[EUR][1000 genomes]
rs73564310	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140239800-140251600	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:140242400-140254000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:140242400-140260200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:140242800-140254400	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr6:140245000-140249000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr6:140246000-140249400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:140246400-140249400	Enhancers	NHDF-Ad	bronchial
8	chr6:140246600-140249400	Enhancers	NHLF	lung
9	chr6:140246800-140249200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:140247200-140248800	Enhancers	Fetal Brain Female	brain
11	chr6:140247200-140250000	Enhancers	K562	blood
12	chr6:140247800-140248800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:140247800-140250000	Enhancers	Fetal Heart	heart
14	chr6:140248000-140248800	Enhancers	HSMM	muscle
15	chr6:140248000-140249200	Enhancers	Muscle Satellite Cultured Cells	--
16	chr6:140248000-140249400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:140248000-140249600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:140248000-140252400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:140248000-140252800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:140248200-140248800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:140248200-140249000	Weak transcription	Pancreas	Pancrea
22	chr6:140248200-140249200	Enhancers	HSMMtube	muscle
23	chr6:140248200-140249400	Enhancers	Osteobl	bone
24	chr6:140248200-140252800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr6:140248200-140254000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:140248400-140248800	Enhancers	Fetal Stomach	stomach
27	chr6:140248400-140249000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:140248400-140249000	Weak transcription	Ovary	ovary

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