Variant report

Variant	rs7756559
Chromosome Location	chr6:37530557-37530558
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37463721..37466572-chr6:37527557..37531360,4	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16890079	1.00[AMR][1000 genomes]
rs2776895	1.00[ASN][1000 genomes]
rs57562221	1.00[AMR][1000 genomes]
rs72857324	0.94[ASN][1000 genomes]
rs9462305	1.00[AMR][1000 genomes]
rs9470565	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37510800-37533800	Enhancers	Primary B cells from peripheral blood	blood
2	chr6:37521200-37533800	Enhancers	Primary B cells from cord blood	blood
3	chr6:37522200-37533600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:37526600-37532000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:37528000-37530600	Enhancers	Fetal Thymus	thymus
6	chr6:37528200-37531600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:37528200-37533000	Enhancers	Brain Germinal Matrix	brain
8	chr6:37528400-37531800	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr6:37528400-37532400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:37528400-37533400	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr6:37528400-37533600	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr6:37528400-37533800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr6:37528600-37533800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr6:37528600-37533800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr6:37528800-37531600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:37528800-37531600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:37528800-37532400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:37528800-37532800	Weak transcription	Brain Angular Gyrus	brain
19	chr6:37528800-37533200	Weak transcription	Brain Anterior Caudate	brain
20	chr6:37528800-37533200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr6:37528800-37535600	Enhancers	Fetal Brain Male	brain
22	chr6:37529200-37531000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:37529200-37531600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:37529200-37531800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:37529200-37533600	Weak transcription	Spleen	Spleen
26	chr6:37529400-37530600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr6:37529800-37531600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:37530000-37532400	Weak transcription	Fetal Brain Female	brain
29	chr6:37530400-37530600	Flanking Active TSS	GM12878-XiMat	blood

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