Variant report

Variant	rs7756613
Chromosome Location	chr6:144077730-144077731
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144069372..144071037-chr6:144077042..144078678,2	MCF-7	breast:
2	chr6:144071732..144074823-chr6:144075904..144078859,3	MCF-7	breast:
3	chr6:144076953..144079572-chr6:144081415..144086815,4	K562	blood:
4	chr6:144074038..144075721-chr6:144077621..144079711,2	K562	blood:

Variant related genes	Relation type
ENSG00000112419	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1935496	0.80[EUR][1000 genomes]
rs4140473	0.81[EUR][1000 genomes]
rs6911389	0.81[EUR][1000 genomes]
rs6912445	0.81[EUR][1000 genomes]
rs6927537	0.81[EUR][1000 genomes]
rs6931865	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv5513	chr6:144068006-144102028	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144053800-144079800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr6:144056200-144080200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr6:144060200-144078400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:144061000-144079800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr6:144061000-144086600	Weak transcription	Primary T cells from cord blood	blood
6	chr6:144063800-144086400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:144064800-144086600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:144066600-144081000	Weak transcription	Esophagus	oesophagus
9	chr6:144066800-144080600	Weak transcription	Spleen	Spleen
10	chr6:144067000-144081000	Weak transcription	Brain Angular Gyrus	brain
11	chr6:144067000-144083000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:144067400-144078400	Weak transcription	NHDF-Ad	bronchial
13	chr6:144067600-144087400	Weak transcription	NH-A	brain
14	chr6:144067800-144078400	Weak transcription	Adipose Nuclei	Adipose
15	chr6:144067800-144086400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:144067800-144095400	Weak transcription	NHLF	lung
17	chr6:144067800-144122000	Weak transcription	Colonic Mucosa	Colon
18	chr6:144068000-144086400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr6:144068200-144078400	Weak transcription	Fetal Kidney	kidney
20	chr6:144068600-144086600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:144068800-144079000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:144069000-144078400	Weak transcription	Pancreas	Pancrea
23	chr6:144069000-144081400	Weak transcription	Right Atrium	heart
24	chr6:144069200-144078200	Weak transcription	K562	blood
25	chr6:144069200-144078400	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr6:144069200-144087200	Weak transcription	Fetal Heart	heart
27	chr6:144069400-144097800	Weak transcription	Gastric	stomach
28	chr6:144069600-144085200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr6:144069600-144093200	Weak transcription	Stomach Mucosa	stomach
30	chr6:144069800-144086400	Weak transcription	Duodenum Mucosa	Duodenum
31	chr6:144070200-144122000	Weak transcription	Small Intestine	intestine
32	chr6:144070600-144086400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr6:144070800-144106200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr6:144072600-144086400	Weak transcription	Right Ventricle	heart
35	chr6:144072600-144095000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr6:144072600-144106400	Weak transcription	HMEC	breast
37	chr6:144072800-144086400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr6:144073800-144078400	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr6:144074200-144087200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr6:144074200-144113200	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr6:144074400-144078600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr6:144074400-144079400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:144074400-144079400	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr6:144074400-144080000	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr6:144074600-144079200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr6:144074600-144083000	Strong transcription	Fetal Intestine Large	intestine
47	chr6:144074800-144079000	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr6:144075000-144077800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr6:144075000-144085800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr6:144075200-144079400	Strong transcription	Fetal Muscle Trunk	muscle

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