Variant report

Variant	rs7757142
Chromosome Location	chr6:143720467-143720468
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143707751..143710016-chr6:143717710..143720535,2	MCF-7	breast:
2	chr6:143718480..143721227-chr6:143732641..143735012,2	K562	blood:

rs_ID	r²[population]
rs4896653	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]

SNP	Gene	Cis/trans	Tissue	Source
rs7757142	C6orf94	cis	cerebellum	SCAN

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143706600-143757400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:143716200-143722400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:143716800-143723600	Enhancers	HMEC	breast
4	chr6:143717000-143723600	Enhancers	NHEK	skin
5	chr6:143717000-143724200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:143717600-143720600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:143717600-143720600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:143717600-143723000	Enhancers	Fetal Muscle Leg	muscle
9	chr6:143717800-143720600	Enhancers	Placenta	Placenta
10	chr6:143718000-143720600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr6:143718400-143721000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:143718400-143721400	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr6:143718600-143721400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr6:143718600-143722400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:143718800-143720600	Enhancers	NH-A	brain
16	chr6:143718800-143721000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr6:143718800-143721200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr6:143718800-143722400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr6:143718800-143722600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr6:143718800-143723600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:143719000-143721200	Weak transcription	Fetal Lung	lung
22	chr6:143719000-143721400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr6:143719000-143721600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:143719000-143721600	Weak transcription	Fetal Heart	heart
25	chr6:143719000-143721600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr6:143719000-143723000	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr6:143719200-143720600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr6:143719200-143721000	Enhancers	HepG2	liver
29	chr6:143719200-143721200	Weak transcription	Small Intestine	intestine
30	chr6:143719200-143721600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:143719200-143721600	Weak transcription	Brain Germinal Matrix	brain
32	chr6:143719200-143721600	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr6:143719200-143721600	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr6:143719200-143721800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr6:143719200-143721800	Weak transcription	A549	lung
36	chr6:143719200-143721800	Weak transcription	HSMMtube	muscle
37	chr6:143719200-143721800	Weak transcription	Osteobl	bone
38	chr6:143719200-143722000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr6:143719200-143722400	Weak transcription	Lung	lung
40	chr6:143719200-143722600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:143719200-143723600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr6:143719200-143753200	Weak transcription	Aorta	Aorta
43	chr6:143719400-143721400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr6:143719400-143721400	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr6:143719400-143721400	Weak transcription	Fetal Intestine Small	intestine
46	chr6:143719400-143721600	Weak transcription	Fetal Intestine Large	intestine
47	chr6:143719400-143721600	Weak transcription	Stomach Mucosa	stomach
48	chr6:143719400-143721600	Weak transcription	HSMM	muscle
49	chr6:143719400-143721800	Weak transcription	Hela-S3	cervix
50	chr6:143719400-143723400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links