Variant report

Variant	rs7757466
Chromosome Location	chr6:86381259-86381260
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:86338689..86357756-chr6:86378394..86390434,115	MCF-7	breast:
2	chr6:86368977..86370570-chr6:86379098..86381596,2	MCF-7	breast:
3	chr6:86323280..86334231-chr6:86380512..86390230,24	K562	blood:

Variant related genes	Relation type
ENSG00000135316	Chromatin interaction
ENSG00000236016	Chromatin interaction
ENSG00000271793	Chromatin interaction
ENSG00000220563	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs6923017	0.80[AFR][1000 genomes]
rs7775788	0.83[AFR][1000 genomes]
rs9351063	0.83[AFR][1000 genomes]
rs9351066	0.87[AFR][1000 genomes]
rs9353323	0.83[AFR][1000 genomes]
rs9353324	0.83[AFR][1000 genomes]
rs9444353	0.83[AFR][1000 genomes]
rs9444356	0.81[AFR][1000 genomes]
rs9450308	0.82[AFR][1000 genomes]
rs9450313	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022445	chr6:85972678-86392968	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv538349	chr6:85972678-86392968	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv886334	chr6:86214507-86394403	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
4	nsv1028293	chr6:86353958-86778912	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	100 gene(s)	inside rSNPs	diseases
5	nsv538350	chr6:86353958-86778912	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	100 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:86354600-86384200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:86355400-86384400	Weak transcription	Pancreas	Pancrea
3	chr6:86367800-86381800	Weak transcription	Lung	lung
4	chr6:86368200-86384800	Weak transcription	Right Ventricle	heart
5	chr6:86368600-86382600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:86368600-86384800	Weak transcription	Spleen	Spleen
7	chr6:86370200-86384400	Weak transcription	Esophagus	oesophagus
8	chr6:86370200-86384400	Weak transcription	Fetal Brain Male	brain
9	chr6:86370200-86385200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr6:86370400-86382600	Weak transcription	A549	lung
11	chr6:86370400-86383200	Weak transcription	Aorta	Aorta
12	chr6:86370400-86384400	Weak transcription	Psoas Muscle	Psoas
13	chr6:86370400-86385200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:86370400-86386800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:86370800-86384600	Weak transcription	HSMMtube	muscle
16	chr6:86371400-86383400	Weak transcription	Colon Smooth Muscle	Colon
17	chr6:86373000-86384400	Weak transcription	Brain Anterior Caudate	brain
18	chr6:86373200-86381800	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr6:86373600-86382000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:86374000-86385000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:86374600-86381800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr6:86374600-86384400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr6:86374600-86385600	Weak transcription	Colonic Mucosa	Colon
24	chr6:86374800-86384800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr6:86375800-86381600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr6:86375800-86383400	Weak transcription	Liver	Liver
27	chr6:86375800-86384400	Weak transcription	Fetal Brain Female	brain
28	chr6:86375800-86384800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:86375800-86385600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr6:86375800-86385800	Weak transcription	Left Ventricle	heart
31	chr6:86376000-86382400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr6:86376000-86384800	Weak transcription	Brain Germinal Matrix	brain
33	chr6:86377200-86384600	Weak transcription	Ovary	ovary
34	chr6:86377400-86384400	Weak transcription	Fetal Intestine Large	intestine
35	chr6:86377600-86381400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr6:86377600-86384600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr6:86377800-86381600	Weak transcription	Fetal Stomach	stomach
38	chr6:86378200-86382000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr6:86378400-86381600	Weak transcription	Placenta	Placenta
40	chr6:86378600-86382200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:86379600-86381800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:86379600-86385000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr6:86379800-86384400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr6:86380000-86381800	Weak transcription	Fetal Thymus	thymus
45	chr6:86380000-86384800	Weak transcription	Primary B cells from cord blood	blood
46	chr6:86380200-86384600	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr6:86380400-86382600	Strong transcription	Fetal Intestine Small	intestine
48	chr6:86380400-86383400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:86380400-86383600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr6:86380400-86384400	Weak transcription	NHLF	lung

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