Variant report

Variant	rs7757613
Chromosome Location	chr6:15284527-15284528
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15264389..15266521-chr6:15283312..15285847,2	K562	blood:
2	chr6:15284333..15285955-chr6:15298459..15300664,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11969197	0.83[ASW][hapmap];0.88[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[YRI][hapmap]
rs16876202	0.85[JPT][hapmap]
rs60007665	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs794781	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv538142	chr6:15243960-15404893	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv601006	chr6:15275305-15300590	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv949448	chr6:15279490-15449441	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15269200-15290000	Weak transcription	NHLF	lung
2	chr6:15270000-15285400	Weak transcription	Thymus	Thymus
3	chr6:15270200-15288800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:15275400-15286000	Weak transcription	HSMM	muscle
5	chr6:15275400-15287800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:15275600-15285000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:15276800-15287800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:15276800-15293200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr6:15277200-15285200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:15277200-15289200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:15277200-15294000	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:15279800-15284800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:15280200-15286000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:15280200-15293800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:15280400-15284600	Weak transcription	NH-A	brain
16	chr6:15280400-15287200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr6:15280400-15288800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr6:15280800-15285000	Weak transcription	Brain Anterior Caudate	brain
19	chr6:15280800-15285000	Weak transcription	NHDF-Ad	bronchial
20	chr6:15280800-15287600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr6:15281000-15287800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr6:15281200-15285000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:15281200-15285000	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr6:15281200-15289000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:15281400-15285000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:15281400-15285000	Weak transcription	Left Ventricle	heart
27	chr6:15281400-15286000	Weak transcription	Brain Angular Gyrus	brain
28	chr6:15281400-15288200	Weak transcription	Brain Substantia Nigra	brain
29	chr6:15281400-15288200	Weak transcription	Right Ventricle	heart
30	chr6:15281400-15289000	Weak transcription	Lung	lung
31	chr6:15281400-15293400	Weak transcription	Esophagus	oesophagus
32	chr6:15281400-15296400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr6:15281600-15287600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr6:15281600-15294000	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr6:15281800-15285000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr6:15281800-15285000	Weak transcription	Adipose Nuclei	Adipose
37	chr6:15281800-15285000	Weak transcription	Colon Smooth Muscle	Colon
38	chr6:15281800-15293400	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr6:15281800-15300200	Weak transcription	Fetal Stomach	stomach
40	chr6:15282000-15284600	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr6:15282000-15285800	Weak transcription	Rectal Smooth Muscle	rectum
42	chr6:15282000-15286000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr6:15282000-15287600	Weak transcription	Brain Germinal Matrix	brain
44	chr6:15282000-15288000	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr6:15282000-15288000	Weak transcription	Small Intestine	intestine
46	chr6:15282000-15288200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr6:15282000-15288200	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr6:15282200-15285800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr6:15282200-15287200	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr6:15282200-15287800	Weak transcription	H9 Cell Line	embryonic stem cell

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