Variant report

Variant	rs7757933
Chromosome Location	chr6:49834445-49834446
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:49834336-49834723	K562	blood:	n/a	n/a
2	BACH1	chr6:49834303-49834701	K562	blood:	n/a	n/a
3	RCOR1	chr6:49834160-49834612	K562	blood:	n/a	n/a
4	MAFK	chr6:49834310-49834649	K562	blood:	n/a	chr6:49834466-49834475
5	JUND	chr6:49834325-49834603	K562	blood:	n/a	n/a
6	CCNT2	chr6:49834294-49834733	K562	blood:	n/a	n/a
7	MAFF	chr6:49834285-49834672	K562	blood:	n/a	n/a
8	CUX1	chr6:49834141-49834822	K562	blood:	n/a	chr6:49834317-49834331
9	GATA3	chr6:49834222-49834736	MCF-7	breast:	n/a	chr6:49834710-49834719
10	CEBPD	chr6:49834247-49834683	K562	blood:	n/a	n/a
11	GATA3	chr6:49834115-49834832	MCF-7	breast:	n/a	chr6:49834710-49834719
12	GATA1	chr6:49834099-49834583	PBDEFetal	blood:	n/a	n/a
13	NR2F2	chr6:49834101-49834620	K562	blood:	n/a	chr6:49834490-49834505
14	GATA2	chr6:49834199-49834636	K562	blood:	n/a	n/a
15	EP300	chr6:49834220-49834676	K562	blood:	n/a	n/a

Variant related genes	Relation type
CRISP1	TF binding region

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10498779	1.00[EUR][1000 genomes]
rs1053497	0.99[EUR][1000 genomes]
rs10948532	0.91[YRI][hapmap]
rs12191200	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs12191354	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs12191473	0.99[EUR][1000 genomes]
rs12193465	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs12193606	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs12196205	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs12197213	1.00[CEU][hapmap]
rs12198253	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs12198437	1.00[CEU][hapmap]
rs12198652	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs12200231	0.99[EUR][1000 genomes]
rs12200365	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs12200699	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs12204651	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs12204917	0.99[EUR][1000 genomes]
rs12207300	1.00[CEU][hapmap]
rs12209344	0.99[EUR][1000 genomes]
rs12209643	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs12209658	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs12211256	1.00[CEU][hapmap]
rs12211947	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs12212140	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs12213240	0.96[EUR][1000 genomes]
rs12213547	0.99[EUR][1000 genomes]
rs12216442	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs12216534	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs1572882	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs17663881	0.99[EUR][1000 genomes]
rs17663956	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs1934854	1.00[CEU][hapmap]
rs3209304	0.99[EUR][1000 genomes]
rs45595734	0.95[EUR][1000 genomes]
rs56118419	0.99[EUR][1000 genomes]
rs57789146	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs593009	0.84[CEU][hapmap]
rs62404901	0.99[EUR][1000 genomes]
rs62404902	0.99[EUR][1000 genomes]
rs62404904	0.99[EUR][1000 genomes]
rs62404905	0.99[EUR][1000 genomes]
rs62404906	0.99[EUR][1000 genomes]
rs62404907	0.99[EUR][1000 genomes]
rs62404910	0.99[EUR][1000 genomes]
rs62404911	0.98[EUR][1000 genomes]
rs62404912	0.96[EUR][1000 genomes]
rs62404913	0.99[EUR][1000 genomes]
rs62404914	0.99[EUR][1000 genomes]
rs62404915	0.98[EUR][1000 genomes]
rs62404939	0.99[EUR][1000 genomes]
rs62404940	0.99[EUR][1000 genomes]
rs6908197	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs6928271	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs7738293	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs7751850	0.99[EUR][1000 genomes]
rs7767534	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs945931	0.91[YRI][hapmap]
rs9473668	1.00[CEU][hapmap]
rs9473680	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933942	chr6:49480550-50004231	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv933833	chr6:49515134-49961765	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv5294	chr6:49816788-49853346	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:49833400-49834800	Enhancers	K562	blood
2	chr6:49834400-49834800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:49834400-49835800	Weak transcription	Fetal Intestine Large	intestine

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