Variant report

Variant	rs7758383
Chromosome Location	chr6:143169723-143169724
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143169186..143172085-chr6:143184516..143186851,2	MCF-7	breast:
2	chr6:143169473..143172002-chr6:143172419..143174158,2	MCF-7	breast:
3	chr6:143166680..143169916-chr6:143203323..143206412,3	MCF-7	breast:
4	chr6:143168758..143171747-chr6:143172682..143174626,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11155265	0.89[ASN][1000 genomes]
rs12190015	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12190804	0.89[ASN][1000 genomes]
rs12192692	0.89[ASN][1000 genomes]
rs12194808	0.89[ASN][1000 genomes]
rs12196693	0.84[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs12199711	0.86[ASN][1000 genomes]
rs12201734	0.86[ASN][1000 genomes]
rs12201987	0.84[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs12203708	0.82[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs12205948	0.89[ASN][1000 genomes]
rs12206012	0.89[ASN][1000 genomes]
rs12208876	0.83[ASN][1000 genomes]
rs12210048	0.82[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs12210301	0.84[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs12214573	0.86[ASN][1000 genomes]
rs17444447	0.89[ASN][1000 genomes]
rs2142938	0.82[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs2184364	0.86[ASN][1000 genomes]
rs2876528	0.89[ASN][1000 genomes]
rs4349826	0.84[ASN][1000 genomes]
rs4492208	0.86[ASN][1000 genomes]
rs62430707	0.90[ASN][1000 genomes]
rs62430709	0.89[ASN][1000 genomes]
rs62430712	0.86[ASN][1000 genomes]
rs62432360	0.82[ASN][1000 genomes]
rs6905453	0.84[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs6910072	0.82[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs6925118	0.89[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs6927858	0.90[ASN][1000 genomes]
rs728589	0.82[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs72990282	0.90[ASN][1000 genomes]
rs972119	0.89[ASN][1000 genomes]
rs998313	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830829	chr6:143058408-143218077	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv538459	chr6:143165802-143360098	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143165800-143169800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:143167000-143171400	Enhancers	Primary B cells from cord blood	blood
3	chr6:143167200-143169800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:143167200-143172800	Enhancers	Primary B cells from peripheral blood	blood
5	chr6:143167200-143172800	Enhancers	Adipose Nuclei	Adipose
6	chr6:143167200-143177000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:143167400-143169800	Enhancers	Fetal Lung	lung
8	chr6:143167400-143170000	Enhancers	Colon Smooth Muscle	Colon
9	chr6:143167400-143170600	Enhancers	Fetal Kidney	kidney
10	chr6:143167400-143172000	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr6:143167400-143172600	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr6:143167400-143175000	Weak transcription	Right Ventricle	heart
13	chr6:143167600-143169800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr6:143167600-143170800	Weak transcription	Psoas Muscle	Psoas
15	chr6:143167600-143171800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr6:143167600-143172000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr6:143167800-143170000	Enhancers	Fetal Heart	heart
18	chr6:143167800-143171200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr6:143167800-143174800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:143167800-143176600	Enhancers	Primary T cells from cord blood	blood
21	chr6:143168000-143171000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:143168200-143170000	Weak transcription	Fetal Intestine Large	intestine
23	chr6:143168200-143170000	Weak transcription	Stomach Mucosa	stomach
24	chr6:143168200-143170200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr6:143168200-143170200	Enhancers	GM12878-XiMat	blood
26	chr6:143168200-143170200	Enhancers	Osteobl	bone
27	chr6:143168200-143170800	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr6:143168200-143170800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:143168200-143171800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:143168200-143176000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:143168400-143169800	Weak transcription	Duodenum Mucosa	Duodenum
32	chr6:143168400-143169800	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr6:143168400-143169800	Enhancers	HUVEC	blood vessel
34	chr6:143168400-143170000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr6:143168400-143170800	Weak transcription	Brain Substantia Nigra	brain
36	chr6:143168400-143170800	Weak transcription	Small Intestine	intestine
37	chr6:143168400-143171000	Weak transcription	Liver	Liver
38	chr6:143168400-143171000	Weak transcription	Brain Anterior Caudate	brain
39	chr6:143168400-143171000	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr6:143168400-143171600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr6:143168400-143171800	Weak transcription	Brain Cingulate Gyrus	brain
42	chr6:143168400-143171800	Weak transcription	Left Ventricle	heart
43	chr6:143168400-143172000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr6:143168400-143172000	Weak transcription	Primary hematopoietic stem cells	blood
45	chr6:143168400-143172200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
46	chr6:143168400-143172200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr6:143168400-143172200	Weak transcription	Rectal Smooth Muscle	rectum
48	chr6:143168400-143173400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr6:143168400-143174400	Weak transcription	Lung	lung
50	chr6:143168400-143174400	Weak transcription	Pancreas	Pancrea

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