Variant report

Variant	rs7758577
Chromosome Location	chr6:79898819-79898820
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10943623	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12214161	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs12661489	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs1337130	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1360839	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1414280	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4618483	0.92[ASN][1000 genomes]
rs56384338	0.92[ASN][1000 genomes]
rs6454101	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6910009	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6912569	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6927281	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7452270	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7751925	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9343883	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9343884	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9352704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9361501	0.84[EUR][1000 genomes]
rs9361503	1.00[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830706	chr6:79825910-79994878	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79883000-79925000	Weak transcription	Pancreas	Pancrea
2	chr6:79890800-79902000	Weak transcription	Esophagus	oesophagus
3	chr6:79892800-79900800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:79893000-79902200	Weak transcription	Left Ventricle	heart
5	chr6:79895000-79901200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:79896800-79899800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:79897400-79899200	Enhancers	Fetal Intestine Small	intestine
8	chr6:79897600-79899400	Enhancers	Liver	Liver
9	chr6:79898000-79900400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr6:79898200-79899800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:79898200-79908200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:79898400-79899000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr6:79898400-79899000	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr6:79898400-79899400	Enhancers	Fetal Intestine Large	intestine
15	chr6:79898400-79900000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr6:79898600-79899000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:79898600-79899400	Enhancers	Fetal Brain Male	brain
18	chr6:79898800-79899000	Enhancers	Aorta	Aorta
19	chr6:79898800-79899000	Enhancers	Fetal Muscle Trunk	muscle
20	chr6:79898800-79899000	Enhancers	Gastric	stomach
21	chr6:79898800-79899000	Enhancers	Psoas Muscle	Psoas
22	chr6:79898800-79899200	Enhancers	Colon Smooth Muscle	Colon
23	chr6:79898800-79899200	Enhancers	Fetal Brain Female	brain
24	chr6:79898800-79899200	Enhancers	Fetal Muscle Leg	muscle
25	chr6:79898800-79899400	Enhancers	Adipose Nuclei	Adipose
26	chr6:79898800-79899600	Enhancers	Fetal Lung	lung
27	chr6:79898800-79899800	Enhancers	Brain Anterior Caudate	brain
28	chr6:79898800-79900600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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