Variant report

Variant	rs7758826
Chromosome Location	chr6:128693242-128693243
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128686496..128688892-chr6:128692532..128694177,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1416518	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs17055834	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs1890543	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs2326682	0.92[AFR][1000 genomes]
rs4351279	0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs4895834	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs57524201	0.90[AFR][1000 genomes]
rs6569526	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs73589563	0.85[AFR][1000 genomes]
rs73589574	0.83[AFR][1000 genomes]
rs7754771	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs8180639	0.87[YRI][hapmap];0.81[AFR][1000 genomes]
rs9388633	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs946425	0.94[YRI][hapmap];0.88[AFR][1000 genomes]
rs946426	1.00[YRI][hapmap];0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1020071	chr6:128579774-129048919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv538441	chr6:128579774-129048919	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128678800-128697000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:128679600-128732000	Weak transcription	Left Ventricle	heart
3	chr6:128679800-128697600	Weak transcription	HSMMtube	muscle
4	chr6:128681800-128695600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:128684600-128696600	Weak transcription	HSMM	muscle
6	chr6:128684800-128696400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:128686600-128696600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:128686800-128695400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:128688200-128697000	Weak transcription	Colonic Mucosa	Colon
10	chr6:128688800-128697200	Weak transcription	Pancreas	Pancrea
11	chr6:128688800-128697200	Weak transcription	HMEC	breast
12	chr6:128688800-128706800	Weak transcription	Gastric	stomach
13	chr6:128688800-128738800	Weak transcription	Psoas Muscle	Psoas
14	chr6:128689800-128693800	Weak transcription	Colon Smooth Muscle	Colon
15	chr6:128690000-128696400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:128690000-128697200	Weak transcription	Ovary	ovary
17	chr6:128690000-128697200	Weak transcription	NHEK	skin
18	chr6:128690000-128704400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr6:128690400-128701800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr6:128691200-128711200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:128691400-128697200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr6:128691600-128694400	Weak transcription	Liver	Liver
23	chr6:128691600-128696600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:128691600-128698400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr6:128691600-128699800	Weak transcription	NHLF	lung
26	chr6:128691600-128730400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr6:128692000-128693800	Enhancers	Fetal Heart	heart
28	chr6:128692200-128693600	Enhancers	Fetal Lung	lung
29	chr6:128692200-128701000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr6:128692400-128695600	Weak transcription	Duodenum Mucosa	Duodenum
31	chr6:128692400-128698000	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr6:128692600-128694800	Weak transcription	HepG2	liver
33	chr6:128692800-128693800	Weak transcription	Brain Substantia Nigra	brain
34	chr6:128693000-128695400	Weak transcription	Fetal Intestine Large	intestine
35	chr6:128693000-128696400	Weak transcription	Fetal Stomach	stomach
36	chr6:128693000-128697000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr6:128693200-128693400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr6:128693200-128693800	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr6:128693200-128694000	Enhancers	HUVEC	blood vessel

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