Variant report
| Variant | rs7759249 |
|---|---|
| Chromosome Location | chr6:80064315-80064316 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-HMGN3-5 | chr6:80064160-80064430 | NONHSAT113688 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs2184424 | 0.88[ASN][1000 genomes] |
| rs2184425 | 0.88[ASN][1000 genomes] |
| rs2184426 | 0.88[ASN][1000 genomes] |
| rs4706091 | 0.81[ASN][1000 genomes] |
| rs4706770 | 0.80[ASN][1000 genomes] |
| rs4706771 | 0.82[ASN][1000 genomes] |
| rs4706773 | 0.86[ASN][1000 genomes] |
| rs6915588 | 0.86[ASN][1000 genomes] |
| rs6940917 | 0.86[ASN][1000 genomes] |
| rs7763396 | 0.89[ASN][1000 genomes] |
| rs9343899 | 0.88[ASN][1000 genomes] |
| rs9352718 | 0.86[ASN][1000 genomes] |
| rs9361517 | 0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1028607 | chr6:79853272-80767716 | Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 43 gene(s) | inside rSNPs | diseases |
| 2 | nsv981159 | chr6:80062955-80064520 | Active TSS | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
