Variant report

Variant	rs7759450
Chromosome Location	chr6:45554202-45554203
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:45533723..45535563-chr6:45552658..45554257,2	MCF-7	breast:
2	chr6:45522194..45524124-chr6:45553960..45556019,2	MCF-7	breast:
3	chr6:45552449..45555221-chr6:45555644..45558229,2	K562	blood:
4	chr6:45411583..45414532-chr6:45553284..45556066,2	MCF-7	breast:
5	chr6:45554176..45557433-chr6:45573679..45578604,5	MCF-7	breast:
6	chr6:45553729..45556718-chr6:45559997..45561581,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs61181072	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv427755	chr6:45474631-45627025	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45537400-45559000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:45551000-45554800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:45551200-45556000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:45551600-45557800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr6:45553000-45558600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:45553600-45554600	Flanking Active TSS	Dnd41	blood
7	chr6:45553600-45555200	Enhancers	Primary hematopoietic stem cells	blood
8	chr6:45553600-45555800	Enhancers	Primary B cells from cord blood	blood
9	chr6:45553600-45555800	Enhancers	Fetal Thymus	thymus
10	chr6:45553600-45556000	Enhancers	Primary B cells from peripheral blood	blood
11	chr6:45553800-45554600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:45553800-45554800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
13	chr6:45553800-45554800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr6:45554000-45554400	Enhancers	Fetal Muscle Leg	muscle
15	chr6:45554000-45554400	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr6:45554000-45554400	Enhancers	Small Intestine	intestine
17	chr6:45554000-45554800	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr6:45554000-45554800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
19	chr6:45554000-45554800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
20	chr6:45554000-45554800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
21	chr6:45554000-45555200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:45554000-45559800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:45554000-45559800	Enhancers	HMEC	breast
24	chr6:45554200-45554400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
25	chr6:45554200-45554400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr6:45554200-45554600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
27	chr6:45554200-45554600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:45554200-45554600	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
29	chr6:45554200-45554800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr6:45554200-45554800	Flanking Active TSS	Primary T cells from cord blood	blood
31	chr6:45554200-45554800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
32	chr6:45554200-45554800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
33	chr6:45554200-45554800	Enhancers	Lung	lung
34	chr6:45554200-45555600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr6:45554200-45560000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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